Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16905

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
4,286,224	+		ABI39_RS16900	0.44	+1.6
4,286,255	+		ABI39_RS16900	0.47	-1.1
4,286,256	-		ABI39_RS16900	0.47	-1.2
4,286,256	-		ABI39_RS16900	0.47	+0.0
4,286,256	-		ABI39_RS16900	0.47	-1.2
4,286,264	+		ABI39_RS16900	0.47	+1.4
4,286,265	-		ABI39_RS16900	0.47	+0.6
4,286,268	-		ABI39_RS16900	0.48	+1.4
4,286,487	+		ABI39_RS16900	0.64	+0.4
4,286,543	+		ABI39_RS16900	0.68	+0.6
4,286,543	+		ABI39_RS16900	0.68	+0.1
4,286,555	+		ABI39_RS16900	0.69	-0.6
4,286,576	-		ABI39_RS16900	0.71	+1.0
4,286,577	+		ABI39_RS16900	0.71	-0.6
4,286,578	-		ABI39_RS16900	0.71	-0.5
4,286,586	+		ABI39_RS16900	0.72	+0.9
4,286,632	-		ABI39_RS16900	0.75	+0.9
4,286,663	-		ABI39_RS16900	0.78	+0.3
4,286,665	-		ABI39_RS16900	0.78	-0.3
4,286,739	-		ABI39_RS16900	0.83	-2.1
4,286,740	+		ABI39_RS16900	0.83	-1.6
4,286,741	-		ABI39_RS16900	0.83	-1.9
4,286,777	+		ABI39_RS16900	0.86	-3.1
4,286,778	-		ABI39_RS16900	0.86	-0.0
4,286,904	-				+0.4
4,287,181	+				+0.5
4,287,356	-		ABI39_RS16905	0.13	-3.6
4,287,415	+		ABI39_RS16905	0.19	-2.4
4,287,419	-		ABI39_RS16905	0.19	-4.6
4,287,551	-		ABI39_RS16905	0.32	-3.9
4,287,551	-		ABI39_RS16905	0.32	-5.0
4,287,582	+		ABI39_RS16905	0.34	-3.8
4,287,583	-		ABI39_RS16905	0.35	-2.7
4,287,584	+		ABI39_RS16905	0.35	-2.7
4,287,603	+		ABI39_RS16905	0.36	-3.0
4,287,645	-		ABI39_RS16905	0.40	-2.2
4,287,657	+		ABI39_RS16905	0.41	-2.5
4,287,755	+		ABI39_RS16905	0.51	-2.4
4,287,756	-		ABI39_RS16905	0.51	-2.6
4,287,761	+		ABI39_RS16905	0.51	-4.1
4,287,765	+		ABI39_RS16905	0.52	-5.2
4,287,766	-		ABI39_RS16905	0.52	-2.4
4,287,857	+		ABI39_RS16905	0.60	-2.4
4,287,871	-		ABI39_RS16905	0.61	-3.4
4,288,017	+		ABI39_RS16905	0.75	-3.4
4,288,034	+		ABI39_RS16905	0.77	-3.1
4,288,114	-		ABI39_RS16905	0.84	-0.1
4,288,161	-		ABI39_RS16905	0.89	-3.9
4,288,189	+				-2.7
4,288,322	-				-4.0
4,288,356	+				+2.7
4,288,379	+				-1.5
4,288,405	-				-0.7
4,288,482	+				-1.4
4,288,483	-		ABI39_RS16910	0.10	-3.2
4,288,515	+		ABI39_RS16910	0.13	-4.4
4,288,562	-		ABI39_RS16910	0.19	-1.2
4,288,579	-		ABI39_RS16910	0.20	-1.9
4,288,668	+		ABI39_RS16910	0.30	-3.7
4,288,681	+		ABI39_RS16910	0.31	-2.9
4,288,837	+		ABI39_RS16910	0.48	-2.6
4,288,861	+		ABI39_RS16910	0.51	-2.5
4,288,896	+		ABI39_RS16910	0.55	-5.3
4,288,955	-		ABI39_RS16910	0.61	-3.0
4,288,959	+		ABI39_RS16910	0.62	-3.7
4,289,009	+		ABI39_RS16910	0.67	-4.5
4,289,054	-		ABI39_RS16910	0.72	-5.2
4,289,124	-		ABI39_RS16910	0.80	-2.8
4,289,184	-		ABI39_RS16910	0.86	-4.6
4,289,231	-				-4.4