Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13230

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
3,440,152	-		ABI39_RS13225	0.41	+1.3
3,440,152	-		ABI39_RS13225	0.41	-0.2
3,440,158	-		ABI39_RS13225	0.42	+2.3
3,440,216	-		ABI39_RS13225	0.46	+1.5
3,440,363	+		ABI39_RS13225	0.57	+0.3
3,440,402	-		ABI39_RS13225	0.60	-1.7
3,440,500	-		ABI39_RS13225	0.68	-1.5
3,440,702	-		ABI39_RS13225	0.84	+1.3
3,440,702	-		ABI39_RS13225	0.84	+3.8
3,440,841	-				+1.3
3,440,955	+				-1.1
3,440,982	-				-2.5
3,441,031	-				-0.0
3,441,031	-				-1.1
3,441,079	+				-0.5
3,441,150	-				-0.0
3,441,151	+				+0.6
3,441,275	-				+0.6
3,441,304	+				-0.3
3,441,305	-				-0.8
3,441,324	-				+0.0
3,441,528	-		ABI39_RS13230	0.18	+0.4
3,441,529	+		ABI39_RS13230	0.18	+0.5
3,441,529	+		ABI39_RS13230	0.18	-0.2
3,441,530	-		ABI39_RS13230	0.18	-2.1
3,441,530	-		ABI39_RS13230	0.18	-0.3
3,441,586	-		ABI39_RS13230	0.21	-0.0
3,441,589	+		ABI39_RS13230	0.21	+0.1
3,441,589	+		ABI39_RS13230	0.21	+0.3
3,441,590	-		ABI39_RS13230	0.21	-0.3
3,441,625	+		ABI39_RS13230	0.22	-1.0
3,441,727	-		ABI39_RS13230	0.26	-0.0
3,441,767	-		ABI39_RS13230	0.28	-2.7
3,441,810	+		ABI39_RS13230	0.30	-2.1
3,441,839	-		ABI39_RS13230	0.31	-0.9
3,441,867	-		ABI39_RS13230	0.32	+1.2
3,441,924	+		ABI39_RS13230	0.35	-0.3
3,441,936	-		ABI39_RS13230	0.35	-0.7
3,441,949	+		ABI39_RS13230	0.36	-0.9
3,441,977	+		ABI39_RS13230	0.37	-0.3
3,441,978	-		ABI39_RS13230	0.37	-0.3
3,442,007	-		ABI39_RS13230	0.38	+0.1
3,442,084	+		ABI39_RS13230	0.41	+2.0
3,442,195	+		ABI39_RS13230	0.46	-0.9
3,442,195	+		ABI39_RS13230	0.46	-0.0
3,442,195	+		ABI39_RS13230	0.46	-0.7
3,442,200	-		ABI39_RS13230	0.46	-0.7
3,442,372	-		ABI39_RS13230	0.53	-0.6
3,442,466	+		ABI39_RS13230	0.57	+1.0
3,442,562	-		ABI39_RS13230	0.61	-2.4
3,442,562	-		ABI39_RS13230	0.61	+0.0
3,442,575	+		ABI39_RS13230	0.61	-0.3
3,442,645	+		ABI39_RS13230	0.64	+0.2
3,442,646	-		ABI39_RS13230	0.64	+0.1
3,442,974	+		ABI39_RS13230	0.77	-2.5
3,442,975	-		ABI39_RS13230	0.78	-1.6
3,443,015	-		ABI39_RS13230	0.79	+0.0
3,443,129	-		ABI39_RS13230	0.84	+1.4
3,443,177	+		ABI39_RS13230	0.86	+1.1
3,443,232	+		ABI39_RS13230	0.88	+1.0
3,443,232	+		ABI39_RS13230	0.88	-0.9
3,443,233	-		ABI39_RS13230	0.88	-0.4
3,443,393	+				+0.6
3,443,393	+				-0.6
3,443,394	-				+0.5
3,443,424	+				-0.4
3,443,509	-				-0.6
3,443,509	-				-3.4
3,443,518	+				+0.8
3,443,519	-				+0.1
3,443,519	-				-0.4
3,443,590	-				+0.3
3,443,635	+				+0.5
3,443,636	-				+0.8
3,443,819	+		ABI39_RS13235	0.21	-0.9
3,443,822	-		ABI39_RS13235	0.21	+0.1
3,443,822	-		ABI39_RS13235	0.21	-0.3
3,443,872	-		ABI39_RS13235	0.25	-1.0
3,443,886	-		ABI39_RS13235	0.26	-0.7
3,443,908	+		ABI39_RS13235	0.28	-0.8
3,443,909	-		ABI39_RS13235	0.28	+0.0
3,443,965	+		ABI39_RS13235	0.33	-1.4
3,443,966	-		ABI39_RS13235	0.33	+0.4
3,444,074	-		ABI39_RS13235	0.42	+0.2
3,444,115	-		ABI39_RS13235	0.45	-3.1
3,444,125	-		ABI39_RS13235	0.46	+0.3
3,444,188	-		ABI39_RS13235	0.51	+0.0
3,444,285	+		ABI39_RS13235	0.59	+0.8
3,444,286	-		ABI39_RS13235	0.60	-0.1
3,444,323	+		ABI39_RS13235	0.63	+0.7
3,444,323	+		ABI39_RS13235	0.63	-1.7
3,444,324	-		ABI39_RS13235	0.63	-3.0
3,444,324	-		ABI39_RS13235	0.63	-1.2
3,444,358	-		ABI39_RS13235	0.66	+0.1
3,444,369	+		ABI39_RS13235	0.66	-0.2
3,444,369	+		ABI39_RS13235	0.66	+2.2
3,444,370	-		ABI39_RS13235	0.67	-0.7
3,444,373	+		ABI39_RS13235	0.67	+0.2