Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12465

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
3,276,752	+				+2.4
3,276,763	+				-0.1
3,276,792	+				+1.6
3,276,841	-		ABI39_RS12460	0.13	+0.1
3,276,847	-		ABI39_RS12460	0.14	+0.2
3,276,851	+		ABI39_RS12460	0.15	-0.8
3,276,852	-		ABI39_RS12460	0.15	+0.7
3,276,923	+		ABI39_RS12460	0.27	-0.7
3,276,924	-		ABI39_RS12460	0.27	+0.9
3,276,927	+		ABI39_RS12460	0.28	-0.1
3,276,995	-		ABI39_RS12460	0.40	+0.4
3,277,002	+		ABI39_RS12460	0.41	-0.5
3,277,003	-		ABI39_RS12460	0.41	+0.2
3,277,017	+		ABI39_RS12460	0.43	-0.0
3,277,017	+		ABI39_RS12460	0.43	-0.1
3,277,096	-		ABI39_RS12460	0.57	-0.2
3,277,206	-		ABI39_RS12460	0.76	+0.6
3,277,286	+		ABI39_RS12460	0.90	-0.5
3,277,322	+				-0.5
3,277,343	+				-0.6
3,277,385	-				+0.1
3,277,386	+				-0.4
3,277,521	+		ABI39_RS12465	0.11	+1.9
3,277,654	-		ABI39_RS12465	0.24	+3.4
3,277,654	-		ABI39_RS12465	0.24	+0.4
3,277,684	-		ABI39_RS12465	0.27	+1.2
3,277,738	-		ABI39_RS12465	0.32	-1.1
3,277,930	+		ABI39_RS12465	0.51	+0.9
3,278,000	-		ABI39_RS12465	0.58	+1.3
3,278,000	-		ABI39_RS12465	0.58	+0.8
3,278,054	-		ABI39_RS12465	0.64	-2.3
3,278,068	+		ABI39_RS12465	0.65	+1.0
3,278,069	-		ABI39_RS12465	0.65	+1.7
3,278,192	+		ABI39_RS12465	0.77	+0.2
3,278,226	+		ABI39_RS12465	0.81	+0.3
3,278,346	+				-1.7
3,278,379	+				-0.7
3,278,431	+				-0.1
3,278,435	-				+0.5
3,278,520	-				-1.5
3,278,617	+		ABI39_RS12470	0.17	+0.2
3,278,644	+		ABI39_RS12470	0.20	-0.3
3,278,644	+		ABI39_RS12470	0.20	+0.3
3,278,652	+		ABI39_RS12470	0.20	+1.7
3,278,655	-		ABI39_RS12470	0.21	-0.6
3,278,806	-		ABI39_RS12470	0.33	-1.3
3,278,901	+		ABI39_RS12470	0.42	+0.2
3,278,911	-		ABI39_RS12470	0.42	+1.4
3,279,026	+		ABI39_RS12470	0.52	+2.7
3,279,026	+		ABI39_RS12470	0.52	+0.6
3,279,028	+		ABI39_RS12470	0.52	+0.6
3,279,158	-		ABI39_RS12470	0.64	+0.4
3,279,226	+		ABI39_RS12470	0.69	-2.6
3,279,342	-		ABI39_RS12470	0.79	+0.0
3,279,346	+		ABI39_RS12470	0.80	-0.9
3,279,347	-		ABI39_RS12470	0.80	-0.2
3,279,348	+		ABI39_RS12470	0.80	+0.4
3,279,387	+		ABI39_RS12470	0.83	+0.1