Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11630

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
3,089,916	-		ABI39_RS11625	0.43	-0.8
3,090,106	+		ABI39_RS11625	0.55	+0.4
3,090,106	+		ABI39_RS11625	0.55	-1.8
3,090,106	+		ABI39_RS11625	0.55	-0.3
3,090,107	-		ABI39_RS11625	0.56	-0.1
3,090,135	-		ABI39_RS11625	0.57	-1.5
3,090,167	-		ABI39_RS11625	0.59	-0.7
3,090,180	+		ABI39_RS11625	0.60	-1.0
3,090,181	-		ABI39_RS11625	0.60	-0.2
3,090,215	-		ABI39_RS11625	0.63	-1.7
3,090,341	-		ABI39_RS11625	0.71	+1.3
3,090,379	-		ABI39_RS11625	0.73	-0.5
3,090,379	-		ABI39_RS11625	0.73	-0.7
3,090,379	-		ABI39_RS11625	0.73	+0.7
3,090,482	-		ABI39_RS11625	0.80	-2.8
3,090,482	-		ABI39_RS11625	0.80	-0.3
3,090,635	+				-1.0
3,090,637	+				-0.8
3,090,641	-				-0.9
3,090,758	-				-2.4
3,090,764	+				-0.6
3,090,794	+				-0.9
3,090,886	+				+0.0
3,091,035	+		ABI39_RS11630	0.30	+0.7
3,091,106	-		ABI39_RS11630	0.41	-1.6
3,091,123	-		ABI39_RS11630	0.43	-0.2
3,091,217	+		ABI39_RS11630	0.57	-1.4
3,091,234	+		ABI39_RS11630	0.59	-0.8
3,091,234	+		ABI39_RS11630	0.59	-1.1
3,091,235	-		ABI39_RS11630	0.60	-2.0
3,091,268	-		ABI39_RS11630	0.64	-1.0
3,091,287	+		ABI39_RS11630	0.67	-1.9
3,091,363	-		ABI39_RS11630	0.78	-3.3
3,091,441	-		ABI39_RS11630	0.90	-4.9
3,091,543	+				-1.0
3,091,638	+				+0.2
3,091,757	+		ABI39_RS11635	0.26	-2.3
3,091,757	+		ABI39_RS11635	0.26	-0.4
3,091,818	+		ABI39_RS11635	0.35	-2.8
3,091,931	+		ABI39_RS11635	0.51	-1.1
3,091,969	-		ABI39_RS11635	0.57	-1.2
3,091,969	-		ABI39_RS11635	0.57	-1.0
3,092,250	+				+1.2
3,092,293	-				-3.7
3,092,376	-				-1.6
3,092,381	+				+0.2
3,092,382	-				+0.7
3,092,391	-				+0.6
3,092,392	+				-1.7
3,092,495	+				-0.5
3,092,496	-				+0.3
3,092,496	-				+1.5