Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11115

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
2,971,357	+		ABI39_RS11110	0.18	+2.6
2,971,358	-		ABI39_RS11110	0.18	-0.5
2,971,358	-		ABI39_RS11110	0.18	+0.6
2,971,369	-		ABI39_RS11110	0.19	-0.9
2,971,591	+		ABI39_RS11110	0.37	+1.1
2,971,592	-		ABI39_RS11110	0.37	-0.1
2,971,592	-		ABI39_RS11110	0.37	+1.7
2,971,601	-		ABI39_RS11110	0.38	+0.1
2,971,604	+		ABI39_RS11110	0.38	-0.8
2,971,773	+		ABI39_RS11110	0.52	+1.2
2,971,846	+		ABI39_RS11110	0.58	+2.2
2,971,948	+		ABI39_RS11110	0.67	+0.8
2,971,948	+		ABI39_RS11110	0.67	+1.9
2,972,272	+				+0.5
2,972,274	+				+1.1
2,972,362	-				-1.2
2,972,362	-				-0.7
2,972,362	-				-0.2
2,972,365	+				+1.5
2,972,366	-				-1.4
2,972,366	-				-0.5
2,972,378	-				-0.9
2,972,401	-				-1.0
2,972,602	+		ABI39_RS11115	0.22	+0.8
2,972,618	+		ABI39_RS11115	0.24	+0.9
2,972,956	+		ABI39_RS11115	0.54	+0.3
2,972,956	+		ABI39_RS11115	0.54	+1.7
2,973,002	+		ABI39_RS11115	0.58	+0.4
2,973,070	+		ABI39_RS11115	0.64	+1.3
2,973,070	+		ABI39_RS11115	0.64	-0.1
2,973,070	+		ABI39_RS11115	0.64	+1.1
2,973,071	-		ABI39_RS11115	0.64	-1.0
2,973,076	+		ABI39_RS11115	0.65	+0.5
2,973,155	-		ABI39_RS11115	0.72	+0.0
2,973,176	-		ABI39_RS11115	0.74	-0.5
2,973,177	+		ABI39_RS11115	0.74	+0.9
2,973,229	-		ABI39_RS11115	0.79	+0.8
2,973,246	+		ABI39_RS11115	0.80	-0.0
2,973,303	+		ABI39_RS11115	0.85	+1.6
2,973,480	-				-0.2
2,973,507	+				+0.2
2,973,507	+				+1.1
2,973,562	+				+2.7
2,973,563	-				+2.8
2,973,632	+				-1.1
2,973,632	+				+0.6
2,973,668	+		ABI39_RS11120	0.12	+0.8
2,973,730	+		ABI39_RS11120	0.17	-0.3
2,973,730	+		ABI39_RS11120	0.17	+0.2
2,973,745	+		ABI39_RS11120	0.18	+1.4
2,973,776	-		ABI39_RS11120	0.20	-0.0
2,973,776	-		ABI39_RS11120	0.20	-2.0
2,973,788	+		ABI39_RS11120	0.21	+0.9
2,974,125	+		ABI39_RS11120	0.44	+0.5
2,974,190	-		ABI39_RS11120	0.49	-1.3
2,974,224	+		ABI39_RS11120	0.51	-0.5
2,974,235	+		ABI39_RS11120	0.52	-0.1
2,974,324	+		ABI39_RS11120	0.58	+1.9
2,974,325	-		ABI39_RS11120	0.58	+0.6
2,974,370	+		ABI39_RS11120	0.61	+1.2
2,974,371	-		ABI39_RS11120	0.61	+1.9
2,974,430	-		ABI39_RS11120	0.65	+0.1