Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11040

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
2,956,269	+		ABI39_RS11035	0.39	+0.8
2,956,274	-		ABI39_RS11035	0.39	-2.4
2,956,314	-		ABI39_RS11035	0.44	-0.2
2,956,323	+		ABI39_RS11035	0.45	-0.1
2,956,678	+		ABI39_RS11035	0.84	-0.1
2,956,721	+		ABI39_RS11035	0.89	-0.9
2,956,814	-				+0.2
2,956,828	+				-0.0
2,956,832	-				-0.2
2,956,954	+				+1.9
2,957,155	-		ABI39_RS11040	0.27	+0.6
2,957,199	+		ABI39_RS11040	0.31	-0.2
2,957,204	-		ABI39_RS11040	0.31	+1.5
2,957,382	+		ABI39_RS11040	0.47	+1.6
2,957,579	+		ABI39_RS11040	0.64	+0.8
2,957,674	-		ABI39_RS11040	0.73	+3.0
2,957,686	+		ABI39_RS11040	0.74	+2.6
2,957,707	-		ABI39_RS11040	0.76	-1.4
2,957,805	+		ABI39_RS11040	0.84	-0.8
2,957,831	-		ABI39_RS11040	0.87	+3.2
2,957,832	+		ABI39_RS11040	0.87	-0.0
2,957,832	+		ABI39_RS11040	0.87	+1.0
2,957,832	+		ABI39_RS11040	0.87	+1.5
2,957,833	-		ABI39_RS11040	0.87	+1.4
2,957,869	-		ABI39_RS11040	0.90	+3.0
2,957,953	+				+3.6
2,957,985	-				+2.0
2,958,034	+				-0.9
2,958,227	+		ABI39_RS11045	0.14	+1.5
2,958,228	-		ABI39_RS11045	0.14	-0.2
2,958,228	-		ABI39_RS11045	0.14	+0.8
2,958,231	+		ABI39_RS11045	0.14	+1.5
2,958,232	-		ABI39_RS11045	0.14	-0.3
2,958,254	+		ABI39_RS11045	0.16	+1.1
2,958,271	+		ABI39_RS11045	0.17	+0.5
2,958,360	+		ABI39_RS11045	0.22	+1.2
2,958,416	+		ABI39_RS11045	0.26	+1.2
2,958,452	+		ABI39_RS11045	0.28	+1.6
2,958,453	-		ABI39_RS11045	0.28	+0.9
2,958,490	-		ABI39_RS11045	0.30	-0.4
2,958,597	-		ABI39_RS11045	0.37	+1.0
2,958,946	+		ABI39_RS11045	0.58	+1.1
2,958,947	-		ABI39_RS11045	0.58	-0.2
2,958,953	+		ABI39_RS11045	0.59	-0.5
2,958,977	+		ABI39_RS11045	0.60	+1.0
2,958,981	-		ABI39_RS11045	0.60	+1.5