Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10200

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
2,721,480	+		ABI39_RS10195	0.40	-4.7
2,721,523	-		ABI39_RS10195	0.42	-4.4
2,721,579	+		ABI39_RS10195	0.46	-2.3
2,721,664	-		ABI39_RS10195	0.52	-2.2
2,721,664	-		ABI39_RS10195	0.52	-5.7
2,721,951	-		ABI39_RS10195	0.71	-3.5
2,722,051	-		ABI39_RS10195	0.78	-1.8
2,722,051	-		ABI39_RS10195	0.78	-3.0
2,722,060	+		ABI39_RS10195	0.78	-2.1
2,722,268	+				-0.7
2,722,326	+				-4.9
2,722,352	-				-4.5
2,722,362	+				-4.3
2,722,381	+				-3.3
2,722,387	+				+1.2
2,722,475	-				-2.4
2,722,475	-				-1.1
2,722,503	-				-6.0
2,722,564	+		ABI39_RS10200	0.12	-4.6
2,722,565	-		ABI39_RS10200	0.12	-1.2
2,722,565	-		ABI39_RS10200	0.12	-4.1
2,722,723	+		ABI39_RS10200	0.24	-3.0
2,722,724	-		ABI39_RS10200	0.24	-2.9
2,722,790	+		ABI39_RS10200	0.29	-2.8
2,722,840	+		ABI39_RS10200	0.32	-1.9
2,722,840	+		ABI39_RS10200	0.32	-3.8
2,722,896	-		ABI39_RS10200	0.36	-2.9
2,722,901	+		ABI39_RS10200	0.37	-6.0
2,722,950	+		ABI39_RS10200	0.40	-4.9
2,722,961	+		ABI39_RS10200	0.41	-3.4
2,723,022	-		ABI39_RS10200	0.45	-5.2
2,723,121	-		ABI39_RS10200	0.52	-1.9
2,723,122	+		ABI39_RS10200	0.53	-4.2
2,723,123	-		ABI39_RS10200	0.53	-4.5
2,723,123	-		ABI39_RS10200	0.53	-4.4
2,723,210	-		ABI39_RS10200	0.59	-3.1
2,723,259	-		ABI39_RS10200	0.62	-4.8
2,723,350	-		ABI39_RS10200	0.69	-5.4
2,723,373	+		ABI39_RS10200	0.71	-4.9
2,723,521	+		ABI39_RS10200	0.81	-2.5
2,723,655	-				-2.5
2,723,667	-				-2.1
2,723,749	+				-3.0
2,723,752	+				-2.6
2,723,808	+				-4.2
2,723,814	-				-4.2
2,723,975	+		ABI39_RS10205	0.31	-5.2
2,723,992	+		ABI39_RS10205	0.34	-4.3
2,723,993	-		ABI39_RS10205	0.34	-1.7
2,724,118	-		ABI39_RS10205	0.55	-2.3
2,724,258	+		ABI39_RS10205	0.78	-3.4
2,724,359	+				+0.4
2,724,359	+				-2.9
2,724,386	-				-2.7
2,724,493	+				-0.5
2,724,494	-				-3.9