Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10085

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
2,694,188	+		ABI39_RS10080	0.64	+0.9
2,694,189	-		ABI39_RS10080	0.64	+1.0
2,694,192	-		ABI39_RS10080	0.64	+0.6
2,694,317	-		ABI39_RS10080	0.71	+0.7
2,694,328	+		ABI39_RS10080	0.72	-1.1
2,694,328	+		ABI39_RS10080	0.72	+0.6
2,694,386	+		ABI39_RS10080	0.76	-0.3
2,694,387	-		ABI39_RS10080	0.76	+0.7
2,694,434	+		ABI39_RS10080	0.79	-0.3
2,694,555	-		ABI39_RS10080	0.86	+1.0
2,694,616	+		ABI39_RS10080	0.90	-0.7
2,694,616	+		ABI39_RS10080	0.90	-0.7
2,694,656	-				+0.9
2,694,657	+				-1.6
2,694,671	+				-0.7
2,694,710	-				+1.2
2,694,752	+				+0.6
2,694,753	-				+0.4
2,694,772	+				-0.7
2,694,786	-				-1.2
2,694,786	-				-0.3
2,694,788	-				-0.3
2,694,789	+				-1.5
2,694,804	+				+0.4
2,695,107	-				+0.6
2,695,247	-		ABI39_RS10085	0.11	-1.6
2,695,339	+		ABI39_RS10085	0.21	-1.4
2,695,470	-		ABI39_RS10085	0.37	+1.8
2,695,473	+		ABI39_RS10085	0.37	-1.4
2,695,474	-		ABI39_RS10085	0.37	-0.2
2,695,474	-		ABI39_RS10085	0.37	+1.1
2,695,494	-		ABI39_RS10085	0.40	-0.6
2,695,569	-		ABI39_RS10085	0.48	-2.1
2,695,620	-		ABI39_RS10085	0.54	-0.9
2,695,627	-		ABI39_RS10085	0.55	-0.2
2,695,634	+		ABI39_RS10085	0.56	-1.9
2,695,671	-		ABI39_RS10085	0.60	-2.1
2,695,695	+		ABI39_RS10085	0.63	-0.9
2,695,724	+		ABI39_RS10085	0.66	+0.4
2,695,776	-		ABI39_RS10085	0.72	-1.2
2,695,932	-				-2.9
2,696,017	+				-0.4
2,696,025	-				+1.1
2,696,034	+				-0.6
2,696,035	-				+1.1
2,696,036	+				+0.6
2,696,100	+				-0.9
2,696,152	+		ABI39_RS10090	0.13	+0.2
2,696,152	+		ABI39_RS10090	0.13	-0.1
2,696,152	+		ABI39_RS10090	0.13	+0.3
2,696,226	-		ABI39_RS10090	0.21	+0.8
2,696,234	+		ABI39_RS10090	0.21	-0.3
2,696,291	-		ABI39_RS10090	0.27	-0.6
2,696,302	-		ABI39_RS10090	0.28	+0.3
2,696,349	+		ABI39_RS10090	0.33	+0.4
2,696,500	+		ABI39_RS10090	0.48	+0.5
2,696,500	+		ABI39_RS10090	0.48	-0.2
2,696,500	+		ABI39_RS10090	0.48	-0.1
2,696,500	+		ABI39_RS10090	0.48	-0.7
2,696,501	-		ABI39_RS10090	0.48	+0.1
2,696,501	-		ABI39_RS10090	0.48	+0.4
2,696,501	-		ABI39_RS10090	0.48	+0.7
2,696,524	+		ABI39_RS10090	0.50	-0.3
2,696,526	+		ABI39_RS10090	0.50	+0.3
2,696,537	-		ABI39_RS10090	0.52	-1.8
2,696,537	-		ABI39_RS10090	0.52	+1.1
2,696,546	-		ABI39_RS10090	0.52	+0.5
2,696,658	+		ABI39_RS10090	0.64	+0.7
2,696,807	+		ABI39_RS10090	0.79	+0.3
2,696,807	+		ABI39_RS10090	0.79	-2.6
2,696,807	+		ABI39_RS10090	0.79	-1.4
2,696,808	-		ABI39_RS10090	0.79	-0.6
2,696,808	-		ABI39_RS10090	0.79	-0.7
2,696,835	+		ABI39_RS10090	0.81	+1.6
2,696,836	-		ABI39_RS10090	0.81	+0.0
2,696,839	+		ABI39_RS10090	0.82	+0.6
2,696,931	+				-0.6
2,696,932	-				+0.1