Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09830

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
2,638,732	+				-1.1
2,638,824	+		ABI39_RS09825	0.16	+1.0
2,638,984	+		ABI39_RS09825	0.31	-0.1
2,639,086	-		ABI39_RS09825	0.40	-3.9
2,639,160	-		ABI39_RS09825	0.47	-1.2
2,639,160	-		ABI39_RS09825	0.47	-1.6
2,639,160	-		ABI39_RS09825	0.47	-3.5
2,639,250	+		ABI39_RS09825	0.56	-0.3
2,639,387	-		ABI39_RS09825	0.68	-1.4
2,639,489	-		ABI39_RS09825	0.78	-1.5
2,639,681	-				-2.3
2,639,699	-				+0.6
2,639,699	-				-0.8
2,639,758	+				-1.8
2,639,799	+				-1.2
2,639,799	+				-2.9
2,640,045	+		ABI39_RS09830	0.29	-4.4
2,640,046	-		ABI39_RS09830	0.29	-1.5
2,640,046	-		ABI39_RS09830	0.29	-1.0
2,640,054	-		ABI39_RS09830	0.29	-0.1
2,640,054	-		ABI39_RS09830	0.29	-0.7
2,640,099	-		ABI39_RS09830	0.34	-0.3
2,640,147	+		ABI39_RS09830	0.38	-2.0
2,640,167	+		ABI39_RS09830	0.40	-3.4
2,640,191	+		ABI39_RS09830	0.42	-0.2
2,640,254	+		ABI39_RS09830	0.48	-2.0
2,640,333	+		ABI39_RS09830	0.55	-5.1
2,640,548	-		ABI39_RS09830	0.74	-2.6
2,640,671	-		ABI39_RS09830	0.86	-0.3
2,640,671	-		ABI39_RS09830	0.86	-1.3
2,640,707	-		ABI39_RS09830	0.89	-4.2
2,640,723	-				-4.2
2,640,843	+				-0.6
2,640,849	+				+1.6
2,640,855	-				+0.2
2,640,883	-				-1.1
2,640,961	+				-0.1
2,640,979	+				-0.9
2,640,981	+				+0.4
2,641,012	-				-3.7
2,641,033	+		ABI39_RS09835	0.12	+0.4
2,641,033	+		ABI39_RS09835	0.12	-1.6
2,641,034	-		ABI39_RS09835	0.12	+0.5
2,641,039	-		ABI39_RS09835	0.12	+0.2
2,641,039	-		ABI39_RS09835	0.12	-0.4
2,641,055	-		ABI39_RS09835	0.14	+1.0
2,641,139	-		ABI39_RS09835	0.22	+1.0
2,641,591	+		ABI39_RS09835	0.69	-1.4
2,641,592	-		ABI39_RS09835	0.69	-1.2
2,641,635	-		ABI39_RS09835	0.73	+0.1
2,641,716	+		ABI39_RS09835	0.81	-1.6
2,641,769	+		ABI39_RS09835	0.87	-0.0