Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS08305

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
2,218,549	-		ABI39_RS08300	0.41	-0.9
2,218,576	-		ABI39_RS08300	0.43	-0.0
2,218,608	+		ABI39_RS08300	0.45	+0.4
2,218,618	-		ABI39_RS08300	0.46	+0.1
2,218,644	+		ABI39_RS08300	0.47	+0.4
2,218,783	+		ABI39_RS08300	0.57	+0.1
2,218,845	-		ABI39_RS08300	0.62	-0.7
2,218,866	+		ABI39_RS08300	0.63	+0.3
2,218,866	+		ABI39_RS08300	0.63	-0.3
2,218,990	-		ABI39_RS08300	0.72	+1.3
2,219,100	+		ABI39_RS08300	0.80	+0.7
2,219,209	+		ABI39_RS08300	0.88	+1.0
2,219,246	-				-0.6
2,219,253	+				+0.1
2,219,362	-				-0.3
2,219,639	+		ABI39_RS08305	0.18	-4.1
2,219,643	+		ABI39_RS08305	0.18	-2.8
2,219,719	-		ABI39_RS08305	0.25	-1.3
2,219,719	-		ABI39_RS08305	0.25	-2.8
2,219,721	-		ABI39_RS08305	0.26	-3.1
2,219,981	-		ABI39_RS08305	0.50	-3.8
2,220,146	-		ABI39_RS08305	0.66	-4.0
2,220,290	-		ABI39_RS08305	0.80	-2.0
2,220,376	+		ABI39_RS08305	0.88	-2.4
2,220,377	-		ABI39_RS08305	0.88	+0.3
2,220,398	+				-0.6
2,220,399	-				-0.6
2,220,431	+				-2.8
2,220,436	-				-4.1
2,220,487	+				-2.2
2,220,520	-				-0.1
2,220,521	+				+0.5
2,220,521	+				-1.6
2,220,521	+				-0.5
2,220,522	-				-0.0
2,220,533	+				-0.3
2,220,670	+				-0.3
2,220,675	-				-0.2
2,220,705	+		ABI39_RS08310	0.11	-2.3
2,220,708	-		ABI39_RS08310	0.11	+1.3
2,220,841	+		ABI39_RS08310	0.20	+1.3
2,220,843	+		ABI39_RS08310	0.20	+0.3
2,220,851	+		ABI39_RS08310	0.20	-0.0
2,221,028	-		ABI39_RS08310	0.32	+0.4
2,221,076	+		ABI39_RS08310	0.35	-0.2
2,221,077	+		ABI39_RS08310	0.35	+1.6
2,221,204	+		ABI39_RS08310	0.43	+1.0
2,221,225	+		ABI39_RS08310	0.45	-0.8
2,221,301	+		ABI39_RS08310	0.50	-0.1
2,221,301	+		ABI39_RS08310	0.50	+0.2
2,221,398	+		ABI39_RS08310	0.56	-0.2
2,221,399	-		ABI39_RS08310	0.56	+1.0
2,221,400	+		ABI39_RS08310	0.56	+0.3
2,221,400	+		ABI39_RS08310	0.56	+0.9
2,221,453	+		ABI39_RS08310	0.60	+0.2
2,221,453	+		ABI39_RS08310	0.60	+2.1
2,221,453	+		ABI39_RS08310	0.60	-0.7
2,221,501	+		ABI39_RS08310	0.63	+1.3