Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS08145

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS08135 and ABI39_RS08140 are separated by 95 nucleotidesABI39_RS08140 and ABI39_RS08145 are separated by 44 nucleotidesABI39_RS08145 and ABI39_RS08150 are separated by 18 nucleotides ABI39_RS08135: ABI39_RS08135 - YicC family protein, at 2,177,410 to 2,178,285 _RS08135 ABI39_RS08140: ABI39_RS08140 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 2,178,381 to 2,179,070 _RS08140 ABI39_RS08145: ABI39_RS08145 - DUF4290 domain-containing protein, at 2,179,115 to 2,179,741 _RS08145 ABI39_RS08150: ABI39_RS08150 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,179,760 to 2,181,064 _RS08150 Position (kb) 2179 2180Strain fitness (log2 ratio) -2 -1 0 1at 2178.199 kb on - strandat 2178.286 kb on - strandat 2179.042 kb on + strandat 2179.112 kb on + strandat 2179.182 kb on + strand, within ABI39_RS08145at 2179.182 kb on + strand, within ABI39_RS08145

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
remove
2,178,199 - +0.3
2,178,286 - +1.3
2,179,042 + -0.5
2,179,112 + +0.1
2,179,182 + ABI39_RS08145 0.11 -1.9
2,179,182 + ABI39_RS08145 0.11 -1.5

Or see this region's nucleotide sequence