Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07090

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
1,954,270	-		ABI39_RS07080	0.78	-1.3
1,954,379	+				-0.3
1,954,380	-				+1.4
1,954,391	+				-0.2
1,954,395	+				-2.2
1,954,980	+		ABI39_RS07085	0.72	-0.9
1,955,181	-				-2.2
1,955,186	-				-1.6
1,955,374	-		ABI39_RS07090	0.29	-3.2
1,955,380	+		ABI39_RS07090	0.30	+1.9
1,955,444	-		ABI39_RS07090	0.46	-2.5
1,955,446	-		ABI39_RS07090	0.46	-2.6
1,955,734	+				-1.8
1,955,765	+				-5.6
1,955,765	+				-2.0
1,955,765	+				-1.9
1,955,766	-				-1.4
1,955,766	-				-3.8
1,955,803	+				-1.8
1,955,876	-		ABI39_RS07095	0.15	-1.7
1,955,880	-		ABI39_RS07095	0.15	-1.3
1,955,907	+		ABI39_RS07095	0.17	-1.1
1,955,908	-		ABI39_RS07095	0.17	-3.3
1,955,908	-		ABI39_RS07095	0.17	-0.7
1,955,920	+		ABI39_RS07095	0.18	-2.0
1,955,920	+		ABI39_RS07095	0.18	-1.7
1,955,921	-		ABI39_RS07095	0.18	-3.1
1,955,931	+		ABI39_RS07095	0.19	-2.8
1,955,932	-		ABI39_RS07095	0.19	-3.8
1,956,040	+		ABI39_RS07095	0.27	-2.6
1,956,041	-		ABI39_RS07095	0.27	-3.5
1,956,118	+		ABI39_RS07095	0.33	+0.8
1,956,142	+		ABI39_RS07095	0.35	-1.2
1,956,142	+		ABI39_RS07095	0.35	-2.6
1,956,194	+		ABI39_RS07095	0.38	-1.4
1,956,319	+		ABI39_RS07095	0.48	-2.9
1,956,347	+		ABI39_RS07095	0.50	-4.7
1,956,347	+		ABI39_RS07095	0.50	-2.8
1,956,347	+		ABI39_RS07095	0.50	-1.9
1,956,347	+		ABI39_RS07095	0.50	-0.7
1,956,348	-		ABI39_RS07095	0.50	-2.2
1,956,348	-		ABI39_RS07095	0.50	-4.3
1,956,348	-		ABI39_RS07095	0.50	-5.4
1,956,349	+		ABI39_RS07095	0.50	-0.3
1,956,357	+		ABI39_RS07095	0.51	-2.7
1,956,392	-		ABI39_RS07095	0.53	-3.4
1,956,416	-		ABI39_RS07095	0.55	-1.0
1,956,518	-		ABI39_RS07095	0.63	-4.0
1,956,520	+		ABI39_RS07095	0.63	-2.4
1,956,580	-		ABI39_RS07095	0.67	-1.4
1,956,655	-		ABI39_RS07095	0.73	-4.7