Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04230

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
1,192,950	-		ABI39_RS04225	0.40	+0.3
1,192,950	-		ABI39_RS04225	0.40	+0.3
1,193,124	+		ABI39_RS04225	0.52	+0.9
1,193,217	+		ABI39_RS04225	0.59	-0.9
1,193,248	-		ABI39_RS04225	0.61	-0.3
1,193,248	-		ABI39_RS04225	0.61	-0.9
1,193,350	+		ABI39_RS04225	0.69	+0.2
1,193,530	+		ABI39_RS04225	0.82	+0.3
1,193,531	-		ABI39_RS04225	0.82	-0.3
1,193,535	+		ABI39_RS04225	0.82	+1.8
1,193,535	+		ABI39_RS04225	0.82	-0.1
1,193,665	-				-0.4
1,193,759	+				+2.2
1,193,856	+				+1.1
1,193,963	-				-0.7
1,194,192	-		ABI39_RS04230	0.19	-2.3
1,194,192	-		ABI39_RS04230	0.19	-2.2
1,194,206	+		ABI39_RS04230	0.20	-0.6
1,194,322	+		ABI39_RS04230	0.28	-1.8
1,194,375	-		ABI39_RS04230	0.32	-1.8
1,194,572	+		ABI39_RS04230	0.45	+0.4
1,194,645	+		ABI39_RS04230	0.50	-0.7
1,194,759	+		ABI39_RS04230	0.58	-1.5
1,194,936	-		ABI39_RS04230	0.70	-0.1
1,194,991	+		ABI39_RS04230	0.74	-1.2
1,194,991	+		ABI39_RS04230	0.74	-3.7
1,194,992	-		ABI39_RS04230	0.74	-2.8
1,194,995	+		ABI39_RS04230	0.74	-1.5
1,195,016	-		ABI39_RS04230	0.75	+1.1
1,195,117	-		ABI39_RS04230	0.82	-3.0
1,195,132	-		ABI39_RS04230	0.83	-1.8
1,195,141	-		ABI39_RS04230	0.84	-1.8
1,195,381	-				-0.2
1,195,452	+		ABI39_RS04235	0.11	+0.1
1,195,458	-		ABI39_RS04235	0.12	+0.6
1,195,523	-		ABI39_RS04235	0.22	+0.2
1,195,556	+		ABI39_RS04235	0.27	-0.2
1,195,569	-		ABI39_RS04235	0.29	+0.4
1,195,699	+		ABI39_RS04235	0.48	-0.3
1,195,720	-		ABI39_RS04235	0.52	+0.7
1,195,723	+		ABI39_RS04235	0.52	+0.1
1,195,731	-		ABI39_RS04235	0.53	+0.5
1,195,744	+		ABI39_RS04235	0.55	-0.2
1,195,746	+		ABI39_RS04235	0.56	-0.1
1,195,747	-		ABI39_RS04235	0.56	+0.6
1,195,860	-		ABI39_RS04235	0.73	-0.0
1,195,860	-		ABI39_RS04235	0.73	+1.5
1,195,868	-		ABI39_RS04235	0.74	+0.0
1,195,877	+		ABI39_RS04235	0.75	+0.3
1,195,895	+		ABI39_RS04235	0.78	-0.1
1,195,895	+		ABI39_RS04235	0.78	+0.4
1,195,965	+		ABI39_RS04235	0.89	+0.4
1,195,965	+		ABI39_RS04235	0.89	-0.5
1,196,098	+				+0.6
1,196,138	+		ABI39_RS04240	0.17	+0.0
1,196,138	+		ABI39_RS04240	0.17	-0.2