Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02965 and ABI39_RS02970 are separated by 13 nucleotides ABI39_RS02970 and ABI39_RS02975 are separated by 5 nucleotides
ABI39_RS02965: ABI39_RS02965 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 865,172 to 866,296
_RS02965
ABI39_RS02970: ABI39_RS02970 - N-acetyl-gamma-glutamyl-phosphate reductase, at 866,310 to 867,278
_RS02970
ABI39_RS02975: ABI39_RS02975 - argininosuccinate synthase, at 867,284 to 868,492
_RS02975
Position (kb) 866
867
868 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 865.416 kb on - strand, within ABI39_RS02965 at 865.524 kb on + strand, within ABI39_RS02965 at 865.601 kb on + strand, within ABI39_RS02965 at 865.667 kb on + strand, within ABI39_RS02965 at 865.712 kb on - strand, within ABI39_RS02965 at 865.768 kb on + strand, within ABI39_RS02965 at 865.827 kb on - strand, within ABI39_RS02965 at 865.846 kb on - strand, within ABI39_RS02965 at 865.880 kb on - strand, within ABI39_RS02965 at 866.018 kb on + strand, within ABI39_RS02965 at 866.044 kb on - strand, within ABI39_RS02965 at 866.084 kb on + strand, within ABI39_RS02965 at 866.151 kb on + strand, within ABI39_RS02965 at 866.154 kb on + strand, within ABI39_RS02965 at 866.154 kb on + strand, within ABI39_RS02965 at 866.375 kb on + strand at 866.539 kb on + strand, within ABI39_RS02970 at 866.542 kb on + strand, within ABI39_RS02970 at 866.601 kb on - strand, within ABI39_RS02970 at 866.646 kb on + strand, within ABI39_RS02970 at 866.726 kb on - strand, within ABI39_RS02970 at 866.735 kb on + strand, within ABI39_RS02970 at 866.736 kb on - strand, within ABI39_RS02970 at 866.871 kb on - strand, within ABI39_RS02970 at 866.947 kb on + strand, within ABI39_RS02970 at 867.036 kb on - strand, within ABI39_RS02970 at 867.144 kb on + strand, within ABI39_RS02970 at 867.145 kb on - strand, within ABI39_RS02970 at 867.145 kb on - strand, within ABI39_RS02970 at 867.159 kb on - strand, within ABI39_RS02970 at 867.183 kb on + strand at 867.192 kb on + strand at 867.198 kb on + strand at 867.260 kb on + strand at 867.278 kb on + strand at 867.310 kb on + strand at 867.315 kb on + strand at 867.445 kb on + strand, within ABI39_RS02975 at 867.475 kb on + strand, within ABI39_RS02975 at 867.493 kb on + strand, within ABI39_RS02975 at 867.950 kb on + strand, within ABI39_RS02975 at 867.956 kb on - strand, within ABI39_RS02975 at 868.155 kb on - strand, within ABI39_RS02975 at 868.221 kb on + strand, within ABI39_RS02975 at 868.222 kb on - strand, within ABI39_RS02975 at 868.222 kb on - strand, within ABI39_RS02975 at 868.225 kb on + strand, within ABI39_RS02975
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 865,416 - ABI39_RS02965 0.22 +0.3 865,524 + ABI39_RS02965 0.31 -1.3 865,601 + ABI39_RS02965 0.38 -0.1 865,667 + ABI39_RS02965 0.44 -1.4 865,712 - ABI39_RS02965 0.48 -0.5 865,768 + ABI39_RS02965 0.53 -0.4 865,827 - ABI39_RS02965 0.58 -0.9 865,846 - ABI39_RS02965 0.60 -1.1 865,880 - ABI39_RS02965 0.63 -1.0 866,018 + ABI39_RS02965 0.75 -1.0 866,044 - ABI39_RS02965 0.78 -0.4 866,084 + ABI39_RS02965 0.81 -0.6 866,151 + ABI39_RS02965 0.87 -1.3 866,154 + ABI39_RS02965 0.87 -1.4 866,154 + ABI39_RS02965 0.87 -0.7 866,375 + -2.5 866,539 + ABI39_RS02970 0.24 -1.5 866,542 + ABI39_RS02970 0.24 -4.7 866,601 - ABI39_RS02970 0.30 -1.6 866,646 + ABI39_RS02970 0.35 -3.3 866,726 - ABI39_RS02970 0.43 -5.1 866,735 + ABI39_RS02970 0.44 -2.5 866,736 - ABI39_RS02970 0.44 -4.1 866,871 - ABI39_RS02970 0.58 -4.7 866,947 + ABI39_RS02970 0.66 -3.2 867,036 - ABI39_RS02970 0.75 -1.6 867,144 + ABI39_RS02970 0.86 -2.3 867,145 - ABI39_RS02970 0.86 +0.1 867,145 - ABI39_RS02970 0.86 -1.5 867,159 - ABI39_RS02970 0.88 -5.3 867,183 + -0.5 867,192 + -4.8 867,198 + -1.6 867,260 + -2.8 867,278 + -0.7 867,310 + -4.0 867,315 + -4.8 867,445 + ABI39_RS02975 0.13 -2.1 867,475 + ABI39_RS02975 0.16 -4.3 867,493 + ABI39_RS02975 0.17 -3.1 867,950 + ABI39_RS02975 0.55 -3.4 867,956 - ABI39_RS02975 0.56 -1.0 868,155 - ABI39_RS02975 0.72 -0.6 868,221 + ABI39_RS02975 0.78 -1.9 868,222 - ABI39_RS02975 0.78 -3.3 868,222 - ABI39_RS02975 0.78 -2.1 868,225 + ABI39_RS02975 0.78 -5.7
Or see this region's nucleotide sequence