Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02875 and ABI39_RS02880 are separated by 37 nucleotides ABI39_RS02880 and ABI39_RS02885 are separated by 158 nucleotides
ABI39_RS02875: ABI39_RS02875 - glutamate-5-semialdehyde dehydrogenase, at 831,679 to 832,932
_RS02875
ABI39_RS02880: ABI39_RS02880 - glutamate 5-kinase, at 832,970 to 834,052
_RS02880
ABI39_RS02885: ABI39_RS02885 - Cof-type HAD-IIB family hydrolase, at 834,211 to 834,993
_RS02885
Position (kb) 832
833
834
835 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 832.085 kb on + strand, within ABI39_RS02875 at 832.153 kb on + strand, within ABI39_RS02875 at 832.313 kb on + strand, within ABI39_RS02875 at 832.313 kb on + strand, within ABI39_RS02875 at 832.344 kb on + strand, within ABI39_RS02875 at 832.421 kb on + strand, within ABI39_RS02875 at 832.477 kb on - strand, within ABI39_RS02875 at 832.510 kb on + strand, within ABI39_RS02875 at 832.515 kb on + strand, within ABI39_RS02875 at 832.612 kb on + strand, within ABI39_RS02875 at 832.709 kb on - strand, within ABI39_RS02875 at 832.709 kb on - strand, within ABI39_RS02875 at 832.959 kb on - strand at 832.986 kb on + strand at 832.987 kb on - strand at 832.987 kb on - strand at 832.997 kb on + strand at 832.998 kb on - strand at 833.094 kb on - strand, within ABI39_RS02880 at 833.132 kb on + strand, within ABI39_RS02880 at 833.170 kb on + strand, within ABI39_RS02880 at 833.357 kb on + strand, within ABI39_RS02880 at 833.357 kb on + strand, within ABI39_RS02880 at 833.526 kb on + strand, within ABI39_RS02880 at 833.526 kb on + strand, within ABI39_RS02880 at 833.527 kb on - strand, within ABI39_RS02880 at 833.527 kb on - strand, within ABI39_RS02880 at 833.611 kb on + strand, within ABI39_RS02880 at 833.660 kb on + strand, within ABI39_RS02880 at 833.660 kb on + strand, within ABI39_RS02880 at 833.765 kb on - strand, within ABI39_RS02880 at 834.080 kb on - strand at 834.134 kb on + strand at 834.184 kb on + strand at 834.185 kb on - strand at 834.267 kb on + strand at 834.391 kb on + strand, within ABI39_RS02885 at 834.413 kb on - strand, within ABI39_RS02885 at 834.482 kb on + strand, within ABI39_RS02885 at 834.614 kb on + strand, within ABI39_RS02885 at 834.768 kb on + strand, within ABI39_RS02885 at 834.769 kb on - strand, within ABI39_RS02885 at 834.885 kb on - strand, within ABI39_RS02885 at 834.888 kb on + strand, within ABI39_RS02885 at 834.945 kb on - strand at 834.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 832,085 + ABI39_RS02875 0.32 -0.7 832,153 + ABI39_RS02875 0.38 -0.1 832,313 + ABI39_RS02875 0.51 -3.0 832,313 + ABI39_RS02875 0.51 -2.3 832,344 + ABI39_RS02875 0.53 -4.1 832,421 + ABI39_RS02875 0.59 -4.7 832,477 - ABI39_RS02875 0.64 -2.0 832,510 + ABI39_RS02875 0.66 -2.1 832,515 + ABI39_RS02875 0.67 -3.9 832,612 + ABI39_RS02875 0.74 -3.9 832,709 - ABI39_RS02875 0.82 -1.4 832,709 - ABI39_RS02875 0.82 -0.3 832,959 - -0.8 832,986 + -4.6 832,987 - -1.2 832,987 - -1.3 832,997 + -1.7 832,998 - +0.2 833,094 - ABI39_RS02880 0.11 -3.7 833,132 + ABI39_RS02880 0.15 -2.0 833,170 + ABI39_RS02880 0.18 -4.7 833,357 + ABI39_RS02880 0.36 -4.8 833,357 + ABI39_RS02880 0.36 -3.7 833,526 + ABI39_RS02880 0.51 -3.4 833,526 + ABI39_RS02880 0.51 -0.8 833,527 - ABI39_RS02880 0.51 -3.3 833,527 - ABI39_RS02880 0.51 -2.4 833,611 + ABI39_RS02880 0.59 -1.4 833,660 + ABI39_RS02880 0.64 -0.9 833,660 + ABI39_RS02880 0.64 -1.9 833,765 - ABI39_RS02880 0.73 -2.4 834,080 - +0.7 834,134 + -0.3 834,184 + +0.8 834,185 - +0.0 834,267 + -0.6 834,391 + ABI39_RS02885 0.23 -1.7 834,413 - ABI39_RS02885 0.26 -1.0 834,482 + ABI39_RS02885 0.35 +1.0 834,614 + ABI39_RS02885 0.51 -0.6 834,768 + ABI39_RS02885 0.71 +1.1 834,769 - ABI39_RS02885 0.71 +1.4 834,885 - ABI39_RS02885 0.86 +0.7 834,888 + ABI39_RS02885 0.86 -0.4 834,945 - +0.2 834,945 - -1.5
Or see this region's nucleotide sequence