Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02860 and ABI39_RS02865 are separated by 29 nucleotides ABI39_RS02865 and ABI39_RS02870 are separated by 385 nucleotides ABI39_RS02870 and ABI39_RS02875 are separated by 19 nucleotides
ABI39_RS02860: ABI39_RS02860 - NigD-like N-terminal domain-containing protein, at 829,230 to 829,880
_RS02860
ABI39_RS02865: ABI39_RS02865 - rhodanese-like domain-containing protein, at 829,910 to 830,308
_RS02865
ABI39_RS02870: ABI39_RS02870 - acetylornithine carbamoyltransferase, at 830,694 to 831,659
_RS02870
ABI39_RS02875: ABI39_RS02875 - glutamate-5-semialdehyde dehydrogenase, at 831,679 to 832,932
_RS02875
Position (kb) 830
831
832 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 829.711 kb on - strand, within ABI39_RS02860 at 829.842 kb on + strand at 830.061 kb on + strand, within ABI39_RS02865 at 830.184 kb on - strand, within ABI39_RS02865 at 830.249 kb on + strand, within ABI39_RS02865 at 830.250 kb on - strand, within ABI39_RS02865 at 830.334 kb on + strand at 830.412 kb on - strand at 830.498 kb on + strand at 830.547 kb on - strand at 830.964 kb on - strand, within ABI39_RS02870 at 830.964 kb on - strand, within ABI39_RS02870 at 831.041 kb on - strand, within ABI39_RS02870 at 831.263 kb on - strand, within ABI39_RS02870 at 831.295 kb on + strand, within ABI39_RS02870 at 831.296 kb on - strand, within ABI39_RS02870 at 831.459 kb on + strand, within ABI39_RS02870 at 831.482 kb on + strand, within ABI39_RS02870 at 831.647 kb on + strand at 831.652 kb on + strand at 831.652 kb on + strand at 831.673 kb on - strand at 831.675 kb on - strand at 831.677 kb on + strand at 831.688 kb on + strand at 831.708 kb on + strand at 831.778 kb on - strand at 831.782 kb on - strand at 831.839 kb on + strand, within ABI39_RS02875 at 831.912 kb on + strand, within ABI39_RS02875 at 831.926 kb on + strand, within ABI39_RS02875 at 831.964 kb on - strand, within ABI39_RS02875 at 832.085 kb on + strand, within ABI39_RS02875 at 832.153 kb on + strand, within ABI39_RS02875 at 832.313 kb on + strand, within ABI39_RS02875 at 832.313 kb on + strand, within ABI39_RS02875 at 832.344 kb on + strand, within ABI39_RS02875 at 832.421 kb on + strand, within ABI39_RS02875 at 832.477 kb on - strand, within ABI39_RS02875 at 832.510 kb on + strand, within ABI39_RS02875 at 832.515 kb on + strand, within ABI39_RS02875 at 832.612 kb on + strand, within ABI39_RS02875
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 829,711 - ABI39_RS02860 0.74 -0.3 829,842 + -0.1 830,061 + ABI39_RS02865 0.38 +0.7 830,184 - ABI39_RS02865 0.69 -3.6 830,249 + ABI39_RS02865 0.85 -0.1 830,250 - ABI39_RS02865 0.85 -0.0 830,334 + +0.5 830,412 - +0.2 830,498 + +0.0 830,547 - -0.7 830,964 - ABI39_RS02870 0.28 -2.2 830,964 - ABI39_RS02870 0.28 -4.6 831,041 - ABI39_RS02870 0.36 -2.3 831,263 - ABI39_RS02870 0.59 -2.5 831,295 + ABI39_RS02870 0.62 -2.6 831,296 - ABI39_RS02870 0.62 -1.2 831,459 + ABI39_RS02870 0.79 -3.6 831,482 + ABI39_RS02870 0.82 -1.9 831,647 + -1.9 831,652 + -3.8 831,652 + -4.7 831,673 - +0.4 831,675 - +1.4 831,677 + -2.8 831,688 + -2.2 831,708 + -1.6 831,778 - -2.1 831,782 - -1.6 831,839 + ABI39_RS02875 0.13 -2.2 831,912 + ABI39_RS02875 0.19 -1.4 831,926 + ABI39_RS02875 0.20 -2.4 831,964 - ABI39_RS02875 0.23 -1.6 832,085 + ABI39_RS02875 0.32 -0.7 832,153 + ABI39_RS02875 0.38 -0.1 832,313 + ABI39_RS02875 0.51 -3.0 832,313 + ABI39_RS02875 0.51 -2.3 832,344 + ABI39_RS02875 0.53 -4.1 832,421 + ABI39_RS02875 0.59 -4.7 832,477 - ABI39_RS02875 0.64 -2.0 832,510 + ABI39_RS02875 0.66 -2.1 832,515 + ABI39_RS02875 0.67 -3.9 832,612 + ABI39_RS02875 0.74 -3.9
Or see this region's nucleotide sequence