Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02175

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02170 and ABI39_RS02175 are separated by 200 nucleotidesABI39_RS02175 and ABI39_RS02180 are separated by 22 nucleotides ABI39_RS02170: ABI39_RS02170 - DEAD/DEAH box helicase, at 638,061 to 639,365 _RS02170 ABI39_RS02175: ABI39_RS02175 - PQQ-binding-like beta-propeller repeat protein, at 639,566 to 642,022 _RS02175 ABI39_RS02180: ABI39_RS02180 - endonuclease/exonuclease/phosphatase family protein, at 642,045 to 642,983 _RS02180 Position (kb) 639 640 641 642 643Strain fitness (log2 ratio) -2 -1 0 1 2 3at 638.586 kb on + strand, within ABI39_RS02170at 638.586 kb on + strand, within ABI39_RS02170at 638.644 kb on - strand, within ABI39_RS02170at 638.721 kb on - strand, within ABI39_RS02170at 638.724 kb on - strand, within ABI39_RS02170at 638.724 kb on - strand, within ABI39_RS02170at 639.077 kb on - strand, within ABI39_RS02170at 639.081 kb on - strand, within ABI39_RS02170at 639.258 kb on + strandat 639.262 kb on - strandat 639.303 kb on - strandat 639.339 kb on + strandat 639.398 kb on - strandat 639.398 kb on - strandat 639.401 kb on + strandat 639.401 kb on + strandat 639.402 kb on - strandat 639.468 kb on - strandat 639.475 kb on + strandat 639.480 kb on - strandat 639.546 kb on - strandat 639.546 kb on - strandat 639.546 kb on - strandat 639.562 kb on - strandat 639.709 kb on + strandat 639.726 kb on - strandat 639.800 kb on - strandat 639.927 kb on - strand, within ABI39_RS02175at 639.927 kb on - strand, within ABI39_RS02175at 639.937 kb on + strand, within ABI39_RS02175at 639.989 kb on - strand, within ABI39_RS02175at 640.015 kb on - strand, within ABI39_RS02175at 640.494 kb on - strand, within ABI39_RS02175at 640.511 kb on + strand, within ABI39_RS02175at 640.739 kb on + strand, within ABI39_RS02175at 640.740 kb on - strand, within ABI39_RS02175at 640.794 kb on + strand, within ABI39_RS02175at 640.926 kb on + strand, within ABI39_RS02175at 640.927 kb on - strand, within ABI39_RS02175at 640.991 kb on - strand, within ABI39_RS02175at 641.005 kb on - strand, within ABI39_RS02175at 641.041 kb on + strand, within ABI39_RS02175at 641.041 kb on + strand, within ABI39_RS02175at 641.042 kb on - strand, within ABI39_RS02175at 641.042 kb on - strand, within ABI39_RS02175at 641.045 kb on + strand, within ABI39_RS02175at 641.146 kb on + strand, within ABI39_RS02175at 641.183 kb on - strand, within ABI39_RS02175at 641.249 kb on + strand, within ABI39_RS02175at 641.377 kb on + strand, within ABI39_RS02175at 641.377 kb on + strand, within ABI39_RS02175at 641.377 kb on + strand, within ABI39_RS02175at 641.377 kb on + strand, within ABI39_RS02175at 641.378 kb on - strand, within ABI39_RS02175at 641.557 kb on + strand, within ABI39_RS02175at 641.771 kb on - strand, within ABI39_RS02175at 641.938 kb on + strandat 642.006 kb on - strandat 642.030 kb on + strandat 642.036 kb on - strandat 642.091 kb on + strandat 642.135 kb on - strandat 642.484 kb on - strand, within ABI39_RS02180at 642.523 kb on - strand, within ABI39_RS02180at 642.539 kb on + strand, within ABI39_RS02180at 642.584 kb on + strand, within ABI39_RS02180at 642.648 kb on + strand, within ABI39_RS02180at 642.648 kb on + strand, within ABI39_RS02180at 642.648 kb on + strand, within ABI39_RS02180at 642.649 kb on - strand, within ABI39_RS02180at 642.649 kb on - strand, within ABI39_RS02180at 642.649 kb on - strand, within ABI39_RS02180at 642.694 kb on + strand, within ABI39_RS02180at 642.699 kb on - strand, within ABI39_RS02180at 642.725 kb on - strand, within ABI39_RS02180at 642.819 kb on - strand, within ABI39_RS02180at 642.828 kb on - strand, within ABI39_RS02180at 642.828 kb on - strand, within ABI39_RS02180at 642.870 kb on + strand, within ABI39_RS02180at 642.951 kb on + strandat 642.988 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
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638,586 + ABI39_RS02170 0.40 +0.0
638,586 + ABI39_RS02170 0.40 +0.0
638,644 - ABI39_RS02170 0.45 +0.1
638,721 - ABI39_RS02170 0.51 +0.8
638,724 - ABI39_RS02170 0.51 +0.3
638,724 - ABI39_RS02170 0.51 +1.1
639,077 - ABI39_RS02170 0.78 +0.2
639,081 - ABI39_RS02170 0.78 +1.1
639,258 + -1.0
639,262 - +0.9
639,303 - +0.4
639,339 + +0.5
639,398 - +0.2
639,398 - -0.9
639,401 + -0.8
639,401 + -0.0
639,402 - -0.6
639,468 - +0.8
639,475 + -2.0
639,480 - -0.0
639,546 - +0.6
639,546 - -0.5
639,546 - -2.2
639,562 - +1.0
639,709 + -0.8
639,726 - +0.0
639,800 - -0.1
639,927 - ABI39_RS02175 0.15 +1.6
639,927 - ABI39_RS02175 0.15 +1.1
639,937 + ABI39_RS02175 0.15 +0.2
639,989 - ABI39_RS02175 0.17 -1.1
640,015 - ABI39_RS02175 0.18 +0.5
640,494 - ABI39_RS02175 0.38 +0.9
640,511 + ABI39_RS02175 0.38 +0.1
640,739 + ABI39_RS02175 0.48 +0.6
640,740 - ABI39_RS02175 0.48 +1.4
640,794 + ABI39_RS02175 0.50 -2.3
640,926 + ABI39_RS02175 0.55 +0.1
640,927 - ABI39_RS02175 0.55 +1.7
640,991 - ABI39_RS02175 0.58 -0.4
641,005 - ABI39_RS02175 0.59 -0.1
641,041 + ABI39_RS02175 0.60 +0.6
641,041 + ABI39_RS02175 0.60 +0.0
641,042 - ABI39_RS02175 0.60 +0.0
641,042 - ABI39_RS02175 0.60 +0.0
641,045 + ABI39_RS02175 0.60 +0.1
641,146 + ABI39_RS02175 0.64 -0.1
641,183 - ABI39_RS02175 0.66 +0.9
641,249 + ABI39_RS02175 0.68 +1.7
641,377 + ABI39_RS02175 0.74 -0.7
641,377 + ABI39_RS02175 0.74 +0.3
641,377 + ABI39_RS02175 0.74 +0.4
641,377 + ABI39_RS02175 0.74 -0.7
641,378 - ABI39_RS02175 0.74 +0.1
641,557 + ABI39_RS02175 0.81 +1.2
641,771 - ABI39_RS02175 0.90 +1.6
641,938 + -0.5
642,006 - +0.1
642,030 + +1.1
642,036 - +0.0
642,091 + -0.5
642,135 - +0.3
642,484 - ABI39_RS02180 0.47 +0.5
642,523 - ABI39_RS02180 0.51 -0.5
642,539 + ABI39_RS02180 0.53 -1.2
642,584 + ABI39_RS02180 0.57 +0.9
642,648 + ABI39_RS02180 0.64 -0.5
642,648 + ABI39_RS02180 0.64 -1.9
642,648 + ABI39_RS02180 0.64 -0.3
642,649 - ABI39_RS02180 0.64 -0.1
642,649 - ABI39_RS02180 0.64 +0.5
642,649 - ABI39_RS02180 0.64 +0.8
642,694 + ABI39_RS02180 0.69 +1.7
642,699 - ABI39_RS02180 0.70 -0.7
642,725 - ABI39_RS02180 0.72 +2.8
642,819 - ABI39_RS02180 0.82 +0.6
642,828 - ABI39_RS02180 0.83 -0.1
642,828 - ABI39_RS02180 0.83 +1.0
642,870 + ABI39_RS02180 0.88 -0.4
642,951 + +1.0
642,988 + +0.2

Or see this region's nucleotide sequence