Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01645 and ABI39_RS01650 are separated by 286 nucleotides ABI39_RS01650 and ABI39_RS01655 are separated by 9 nucleotides
ABI39_RS01645: ABI39_RS01645 - putative transporter, at 492,443 to 494,113
_RS01645
ABI39_RS01650: ABI39_RS01650 - methylmalonyl-CoA mutase small subunit, at 494,400 to 496,310
_RS01650
ABI39_RS01655: ABI39_RS01655 - methylmalonyl-CoA mutase, at 496,320 to 498,470
_RS01655
Position (kb) 494
495
496
497 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 493.647 kb on + strand, within ABI39_RS01645 at 493.892 kb on + strand, within ABI39_RS01645 at 493.893 kb on - strand, within ABI39_RS01645 at 493.896 kb on - strand, within ABI39_RS01645 at 493.984 kb on + strand at 493.992 kb on - strand at 493.998 kb on - strand at 494.093 kb on + strand at 494.118 kb on + strand at 494.119 kb on - strand at 494.119 kb on - strand at 494.125 kb on - strand at 494.193 kb on - strand at 494.371 kb on - strand at 494.408 kb on + strand at 494.412 kb on - strand at 494.614 kb on + strand, within ABI39_RS01650 at 494.639 kb on + strand, within ABI39_RS01650 at 494.640 kb on - strand, within ABI39_RS01650 at 494.668 kb on + strand, within ABI39_RS01650 at 494.669 kb on - strand, within ABI39_RS01650 at 494.922 kb on + strand, within ABI39_RS01650 at 495.233 kb on + strand, within ABI39_RS01650 at 495.234 kb on - strand, within ABI39_RS01650 at 495.234 kb on - strand, within ABI39_RS01650 at 495.253 kb on + strand, within ABI39_RS01650 at 495.506 kb on + strand, within ABI39_RS01650 at 495.559 kb on + strand, within ABI39_RS01650 at 495.583 kb on - strand, within ABI39_RS01650 at 496.109 kb on + strand, within ABI39_RS01650 at 496.131 kb on + strand at 496.145 kb on + strand at 496.165 kb on + strand at 496.341 kb on - strand at 496.346 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.349 kb on - strand at 496.349 kb on - strand at 496.434 kb on - strand at 496.488 kb on + strand at 496.488 kb on + strand at 496.696 kb on + strand, within ABI39_RS01655 at 496.709 kb on - strand, within ABI39_RS01655 at 496.709 kb on - strand, within ABI39_RS01655 at 496.930 kb on - strand, within ABI39_RS01655 at 496.972 kb on + strand, within ABI39_RS01655 at 496.980 kb on + strand, within ABI39_RS01655 at 497.012 kb on + strand, within ABI39_RS01655 at 497.013 kb on - strand, within ABI39_RS01655 at 497.073 kb on + strand, within ABI39_RS01655 at 497.216 kb on + strand, within ABI39_RS01655
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 493,647 + ABI39_RS01645 0.72 -0.7 493,892 + ABI39_RS01645 0.87 +1.1 493,893 - ABI39_RS01645 0.87 +0.8 493,896 - ABI39_RS01645 0.87 -1.6 493,984 + +0.2 493,992 - +1.3 493,998 - +0.4 494,093 + -0.3 494,118 + -0.3 494,119 - -0.5 494,119 - -2.1 494,125 - -0.1 494,193 - -2.1 494,371 - -4.2 494,408 + -1.5 494,412 - -3.2 494,614 + ABI39_RS01650 0.11 -1.5 494,639 + ABI39_RS01650 0.13 -5.0 494,640 - ABI39_RS01650 0.13 -0.8 494,668 + ABI39_RS01650 0.14 -1.7 494,669 - ABI39_RS01650 0.14 -3.9 494,922 + ABI39_RS01650 0.27 -2.3 495,233 + ABI39_RS01650 0.44 -2.1 495,234 - ABI39_RS01650 0.44 -3.4 495,234 - ABI39_RS01650 0.44 -4.1 495,253 + ABI39_RS01650 0.45 -1.9 495,506 + ABI39_RS01650 0.58 -1.3 495,559 + ABI39_RS01650 0.61 -3.8 495,583 - ABI39_RS01650 0.62 -2.6 496,109 + ABI39_RS01650 0.89 -3.7 496,131 + -0.9 496,145 + -1.8 496,165 + -2.0 496,341 - -2.5 496,346 + -2.3 496,348 + -0.6 496,348 + -1.7 496,348 + +0.7 496,348 + -1.4 496,349 - -4.7 496,349 - -3.6 496,434 - -1.2 496,488 + -2.6 496,488 + -1.2 496,696 + ABI39_RS01655 0.17 -3.4 496,709 - ABI39_RS01655 0.18 -2.2 496,709 - ABI39_RS01655 0.18 -2.9 496,930 - ABI39_RS01655 0.28 -3.2 496,972 + ABI39_RS01655 0.30 -0.7 496,980 + ABI39_RS01655 0.31 -4.2 497,012 + ABI39_RS01655 0.32 -2.6 497,013 - ABI39_RS01655 0.32 -2.9 497,073 + ABI39_RS01655 0.35 -2.6 497,216 + ABI39_RS01655 0.42 -0.9
Or see this region's nucleotide sequence