Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00405

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
107,265	-				+0.6
107,265	-				+1.0
107,267	-				+0.3
107,286	-				+1.1
107,364	-				+0.2
108,086	-				-1.4
108,122	+				-0.7
108,127	-				-1.3
108,189	-				-2.0
108,312	+				-2.9
108,313	-				-2.0
108,441	-				-2.9
108,495	-				-2.4
108,572	+		ABI39_RS00405	0.10	-3.2
108,669	+		ABI39_RS00405	0.13	-2.5
108,710	-		ABI39_RS00405	0.14	-2.2
108,784	+		ABI39_RS00405	0.16	-1.5
108,820	+		ABI39_RS00405	0.17	-1.9
108,856	-		ABI39_RS00405	0.18	-1.4
109,052	-		ABI39_RS00405	0.23	-2.5
109,061	+		ABI39_RS00405	0.23	-1.5
109,062	-		ABI39_RS00405	0.23	-1.2
109,225	-		ABI39_RS00405	0.28	-1.6
109,266	-		ABI39_RS00405	0.29	-1.4
109,493	-		ABI39_RS00405	0.35	-2.4
109,627	-		ABI39_RS00405	0.39	-2.2
109,932	+		ABI39_RS00405	0.47	-2.9
109,933	-		ABI39_RS00405	0.47	-1.7
110,002	-		ABI39_RS00405	0.49	-2.5
110,413	+		ABI39_RS00405	0.60	-1.6
110,506	+		ABI39_RS00405	0.62	-2.0
110,510	+		ABI39_RS00405	0.62	-2.3
110,510	+		ABI39_RS00405	0.62	-2.5
110,511	-		ABI39_RS00405	0.62	-2.7
110,653	-		ABI39_RS00405	0.66	-1.4
110,657	-		ABI39_RS00405	0.66	-2.4
110,705	-		ABI39_RS00405	0.68	-1.1
110,770	+		ABI39_RS00405	0.69	-3.1
110,880	+		ABI39_RS00405	0.72	-1.5
110,885	+		ABI39_RS00405	0.72	-1.9
110,997	-		ABI39_RS00405	0.75	-1.8
111,004	-		ABI39_RS00405	0.76	-1.7
111,204	-		ABI39_RS00405	0.81	-2.9
111,402	-		ABI39_RS00405	0.86	-4.5
111,437	-		ABI39_RS00405	0.87	-2.2
111,456	+		ABI39_RS00405	0.88	-2.0
111,596	-				-1.4
111,605	-				-1.1
111,669	+				-1.2
111,683	+				-2.0
111,683	+				-3.1
111,809	+				-2.3
111,823	+				-2.5
111,874	+				-0.8
112,051	-				-0.7
112,170	+				-1.1
112,204	+				+1.6
112,453	-		ABI39_RS00410	0.12	+0.3