Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24215

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttraL and traA are separated by 14 nucleotidestraA and traY are separated by 42 nucleotidestraY and traJ are separated by 135 nucleotides NOLOHH_24210: traL - type IV conjugative transfer system protein TraL, at 528 to 839 traL NOLOHH_24215: traA - type IV conjugative transfer system pilin TraA, at 854 to 1,219 traA NOLOHH_24220: traY - conjugal transfer relaxosome protein TraY, at 1,262 to 1,477 traY NOLOHH_24225: traJ - conjugal transfer transcriptional regulator TraJ, at 1,613 to 2,260 traJ Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.062 kb on + strandat 0.063 kb on - strandat 0.275 kb on + strandat 0.275 kb on + strandat 0.276 kb on - strandat 0.392 kb on - strandat 0.395 kb on + strandat 0.887 kb on - strandat 0.887 kb on - strandat 0.887 kb on - strandat 0.891 kb on - strand, within traAat 0.942 kb on + strand, within traAat 0.943 kb on - strand, within traAat 1.206 kb on - strandat 1.220 kb on - strandat 1.998 kb on - strand, within traJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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62 + -1.5
63 - -0.6
275 + +1.3
275 + +0.2
276 - -1.8
392 - -1.0
395 + +1.2
887 - -0.9
887 - +1.0
887 - -1.2
891 - traA NOLOHH_24215 0.10 -0.7
942 + traA NOLOHH_24215 0.24 -1.1
943 - traA NOLOHH_24215 0.24 -0.6
1,206 - +0.3
1,220 - -0.2
1,998 - traJ NOLOHH_24225 0.59 +0.1

Or see this region's nucleotide sequence