Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22285

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntartP and artI are separated by 17 nucleotidesartI and artQ are separated by 6 nucleotidesartQ and artM overlap by 1 nucleotidesartM and artJ are separated by 291 nucleotides NOLOHH_22275: artP - arginine ABC transporter ATP-binding protein ArtP, at 4,399,353 to 4,400,081 artP NOLOHH_22280: artI - Putative ABC transporter arginine-binding protein 2, at 4,400,099 to 4,400,830 artI NOLOHH_22285: artQ - arginine ABC transporter permease ArtQ, at 4,400,837 to 4,401,553 artQ NOLOHH_22290: artM - arginine ABC transporter permease ArtM, at 4,401,553 to 4,402,221 artM NOLOHH_22300: artJ - ABC transporter substrate-binding protein ArtJ, at 4,402,513 to 4,403,244 artJ Position (kb) 4400 4401 4402Strain fitness (log2 ratio) -2 -1 0 1 2at 4399.837 kb on + strand, within artPat 4399.968 kb on - strand, within artPat 4399.989 kb on + strand, within artPat 4399.989 kb on + strand, within artPat 4399.989 kb on + strand, within artPat 4399.990 kb on - strand, within artPat 4400.124 kb on + strandat 4400.137 kb on + strandat 4400.284 kb on + strand, within artIat 4400.293 kb on + strand, within artIat 4400.411 kb on + strand, within artIat 4400.411 kb on + strand, within artIat 4400.450 kb on + strand, within artIat 4400.450 kb on + strand, within artIat 4400.450 kb on + strand, within artIat 4400.565 kb on - strand, within artIat 4400.696 kb on + strand, within artIat 4400.696 kb on + strand, within artIat 4400.795 kb on + strandat 4400.828 kb on + strandat 4400.828 kb on + strandat 4400.829 kb on - strandat 4401.035 kb on + strand, within artQat 4401.179 kb on + strand, within artQat 4401.397 kb on - strand, within artQat 4401.703 kb on + strand, within artMat 4401.703 kb on + strand, within artMat 4401.703 kb on + strand, within artMat 4401.705 kb on + strand, within artMat 4401.705 kb on + strand, within artMat 4401.827 kb on + strand, within artMat 4401.827 kb on + strand, within artMat 4401.954 kb on + strand, within artMat 4402.035 kb on + strand, within artMat 4402.048 kb on + strand, within artMat 4402.093 kb on + strand, within artMat 4402.105 kb on + strand, within artMat 4402.105 kb on + strand, within artMat 4402.105 kb on + strand, within artMat 4402.105 kb on + strand, within artMat 4402.106 kb on - strand, within artMat 4402.112 kb on + strand, within artMat 4402.141 kb on + strand, within artMat 4402.232 kb on + strandat 4402.253 kb on + strandat 4402.254 kb on - strandat 4402.262 kb on + strandat 4402.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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4,399,837 + artP NOLOHH_22275 0.66 -0.2
4,399,968 - artP NOLOHH_22275 0.84 -1.8
4,399,989 + artP NOLOHH_22275 0.87 +1.3
4,399,989 + artP NOLOHH_22275 0.87 +0.5
4,399,989 + artP NOLOHH_22275 0.87 +0.7
4,399,990 - artP NOLOHH_22275 0.87 -0.2
4,400,124 + -0.7
4,400,137 + +1.9
4,400,284 + artI NOLOHH_22280 0.25 -1.6
4,400,293 + artI NOLOHH_22280 0.27 +0.4
4,400,411 + artI NOLOHH_22280 0.43 -0.1
4,400,411 + artI NOLOHH_22280 0.43 -0.7
4,400,450 + artI NOLOHH_22280 0.48 +0.9
4,400,450 + artI NOLOHH_22280 0.48 +1.3
4,400,450 + artI NOLOHH_22280 0.48 -0.3
4,400,565 - artI NOLOHH_22280 0.64 +0.1
4,400,696 + artI NOLOHH_22280 0.82 -0.3
4,400,696 + artI NOLOHH_22280 0.82 +0.2
4,400,795 + +0.4
4,400,828 + -0.1
4,400,828 + -0.7
4,400,829 - -1.4
4,401,035 + artQ NOLOHH_22285 0.28 -0.5
4,401,179 + artQ NOLOHH_22285 0.48 +0.6
4,401,397 - artQ NOLOHH_22285 0.78 -1.2
4,401,703 + artM NOLOHH_22290 0.22 -0.2
4,401,703 + artM NOLOHH_22290 0.22 -1.4
4,401,703 + artM NOLOHH_22290 0.22 +0.2
4,401,705 + artM NOLOHH_22290 0.23 +1.3
4,401,705 + artM NOLOHH_22290 0.23 +0.6
4,401,827 + artM NOLOHH_22290 0.41 -1.2
4,401,827 + artM NOLOHH_22290 0.41 +0.7
4,401,954 + artM NOLOHH_22290 0.60 +1.7
4,402,035 + artM NOLOHH_22290 0.72 +0.7
4,402,048 + artM NOLOHH_22290 0.74 +0.7
4,402,093 + artM NOLOHH_22290 0.81 +0.2
4,402,105 + artM NOLOHH_22290 0.83 -0.6
4,402,105 + artM NOLOHH_22290 0.83 -0.1
4,402,105 + artM NOLOHH_22290 0.83 +0.2
4,402,105 + artM NOLOHH_22290 0.83 -0.1
4,402,106 - artM NOLOHH_22290 0.83 -0.2
4,402,112 + artM NOLOHH_22290 0.84 +0.1
4,402,141 + artM NOLOHH_22290 0.88 -0.8
4,402,232 + +0.6
4,402,253 + +0.2
4,402,254 - +2.2
4,402,262 + -2.0
4,402,538 + -0.4

Or see this region's nucleotide sequence