Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20690

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttreA and ycgY are separated by 78 nucleotidesycgY and ymgE are separated by 177 nucleotidesymgE and ycgR are separated by 200 nucleotidesycgR and emtA are separated by 1 nucleotides NOLOHH_20680: treA - alpha,alpha-trehalase, at 4,071,771 to 4,073,468 treA NOLOHH_20685: ycgY - Uncharacterized protein YcgY, at 4,073,547 to 4,073,987 ycgY NOLOHH_20690: ymgE - UPF0410 protein YmgE, at 4,074,165 to 4,074,419 ymgE NOLOHH_20695: ycgR - Flagellar brake protein YcgR, at 4,074,620 to 4,075,354 ycgR NOLOHH_20700: emtA - membrane-bound lytic murein transglycosylase EmtA, at 4,075,356 to 4,075,967 emtA Position (kb) 4074 4075Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4073.232 kb on + strand, within treAat 4073.262 kb on + strand, within treAat 4073.262 kb on + strand, within treAat 4073.533 kb on - strandat 4073.533 kb on - strandat 4073.533 kb on - strandat 4073.684 kb on - strand, within ycgYat 4073.969 kb on + strandat 4074.008 kb on - strandat 4074.067 kb on + strandat 4074.167 kb on - strandat 4074.207 kb on - strand, within ymgEat 4074.363 kb on + strand, within ymgEat 4074.364 kb on - strand, within ymgEat 4074.364 kb on - strand, within ymgEat 4074.474 kb on + strandat 4074.475 kb on - strandat 4074.475 kb on - strandat 4074.479 kb on - strandat 4074.559 kb on + strandat 4075.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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4,073,232 + treA NOLOHH_20680 0.86 +0.0
4,073,262 + treA NOLOHH_20680 0.88 +0.5
4,073,262 + treA NOLOHH_20680 0.88 -0.4
4,073,533 - -0.5
4,073,533 - -0.4
4,073,533 - -3.1
4,073,684 - ycgY NOLOHH_20685 0.31 +1.0
4,073,969 + +1.3
4,074,008 - +0.0
4,074,067 + +2.0
4,074,167 - +0.5
4,074,207 - ymgE NOLOHH_20690 0.16 -2.6
4,074,363 + ymgE NOLOHH_20690 0.78 -0.2
4,074,364 - ymgE NOLOHH_20690 0.78 -0.3
4,074,364 - ymgE NOLOHH_20690 0.78 -0.4
4,074,474 + -1.8
4,074,475 - -0.1
4,074,475 - +0.9
4,074,479 - +0.3
4,074,559 + +0.5
4,075,291 - +0.1

Or see this region's nucleotide sequence