Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19790

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_19780 and NOLOHH_19785 are separated by 262 nucleotidesNOLOHH_19785 and NOLOHH_19790 are separated by 40 nucleotidesNOLOHH_19790 and NOLOHH_19795 are separated by 71 nucleotidesNOLOHH_19795 and NOLOHH_19800 overlap by 4 nucleotidesNOLOHH_19800 and NOLOHH_19805 are separated by 79 nucleotides NOLOHH_19780: NOLOHH_19780 - hypothetical protein, at 3,900,861 to 3,902,252 _19780 NOLOHH_19785: NOLOHH_19785 - DUF977 domain-containing protein, at 3,902,515 to 3,902,937 _19785 NOLOHH_19790: NOLOHH_19790 - phage replisome organizer, at 3,902,978 to 3,904,048 _19790 NOLOHH_19795: NOLOHH_19795 - Rha family transcriptional regulator, at 3,904,120 to 3,904,545 _19795 NOLOHH_19800: NOLOHH_19800 - DNA-binding protein, at 3,904,542 to 3,904,796 _19800 NOLOHH_19805: NOLOHH_19805 - transcriptional regulator, at 3,904,876 to 3,905,295 _19805 Position (kb) 3902 3903 3904 3905Strain fitness (log2 ratio) -2 -1 0 1at 3902.214 kb on + strandat 3902.219 kb on + strandat 3902.313 kb on + strandat 3902.569 kb on - strand, within NOLOHH_19785at 3902.605 kb on - strand, within NOLOHH_19785at 3902.769 kb on - strand, within NOLOHH_19785at 3902.771 kb on - strand, within NOLOHH_19785at 3902.817 kb on - strand, within NOLOHH_19785at 3902.980 kb on - strandat 3902.980 kb on - strandat 3903.157 kb on - strand, within NOLOHH_19790at 3903.566 kb on - strand, within NOLOHH_19790at 3903.566 kb on - strand, within NOLOHH_19790at 3903.596 kb on - strand, within NOLOHH_19790at 3903.807 kb on - strand, within NOLOHH_19790at 3903.942 kb on + strandat 3903.943 kb on - strandat 3903.943 kb on - strandat 3903.943 kb on - strandat 3903.943 kb on - strandat 3903.943 kb on - strandat 3903.943 kb on - strandat 3903.943 kb on - strandat 3903.943 kb on - strandat 3903.943 kb on - strandat 3904.137 kb on + strandat 3904.596 kb on + strand, within NOLOHH_19800

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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3,902,214 + +0.6
3,902,219 + +0.4
3,902,313 + +0.3
3,902,569 - NOLOHH_19785 0.13 -0.7
3,902,605 - NOLOHH_19785 0.21 +0.4
3,902,769 - NOLOHH_19785 0.60 -0.0
3,902,771 - NOLOHH_19785 0.61 +0.6
3,902,817 - NOLOHH_19785 0.71 -2.6
3,902,980 - +0.0
3,902,980 - +0.3
3,903,157 - NOLOHH_19790 0.17 -1.8
3,903,566 - NOLOHH_19790 0.55 +0.5
3,903,566 - NOLOHH_19790 0.55 +1.2
3,903,596 - NOLOHH_19790 0.58 -1.5
3,903,807 - NOLOHH_19790 0.77 -0.6
3,903,942 + -1.6
3,903,943 - +0.1
3,903,943 - +0.4
3,903,943 - +1.1
3,903,943 - -0.5
3,903,943 - -0.9
3,903,943 - -0.1
3,903,943 - +0.2
3,903,943 - -0.4
3,903,943 - +1.0
3,904,137 + -1.4
3,904,596 + NOLOHH_19800 0.21 +1.6

Or see this region's nucleotide sequence