Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_19780 and NOLOHH_19785 are separated by 262 nucleotides NOLOHH_19785 and NOLOHH_19790 are separated by 40 nucleotides NOLOHH_19790 and NOLOHH_19795 are separated by 71 nucleotides NOLOHH_19795 and NOLOHH_19800 overlap by 4 nucleotides NOLOHH_19800 and NOLOHH_19805 are separated by 79 nucleotides
NOLOHH_19780: NOLOHH_19780 - hypothetical protein, at 3,900,861 to 3,902,252
_19780
NOLOHH_19785: NOLOHH_19785 - DUF977 domain-containing protein, at 3,902,515 to 3,902,937
_19785
NOLOHH_19790: NOLOHH_19790 - phage replisome organizer, at 3,902,978 to 3,904,048
_19790
NOLOHH_19795: NOLOHH_19795 - Rha family transcriptional regulator, at 3,904,120 to 3,904,545
_19795
NOLOHH_19800: NOLOHH_19800 - DNA-binding protein, at 3,904,542 to 3,904,796
_19800
NOLOHH_19805: NOLOHH_19805 - transcriptional regulator, at 3,904,876 to 3,905,295
_19805
Position (kb)
3902
3903
3904
3905 Strain fitness (log2 ratio)
-2
-1
0
1 at 3902.214 kb on + strand at 3902.219 kb on + strand at 3902.313 kb on + strand at 3902.569 kb on - strand, within NOLOHH_19785 at 3902.605 kb on - strand, within NOLOHH_19785 at 3902.769 kb on - strand, within NOLOHH_19785 at 3902.771 kb on - strand, within NOLOHH_19785 at 3902.817 kb on - strand, within NOLOHH_19785 at 3902.980 kb on - strand at 3902.980 kb on - strand at 3903.157 kb on - strand, within NOLOHH_19790 at 3903.566 kb on - strand, within NOLOHH_19790 at 3903.566 kb on - strand, within NOLOHH_19790 at 3903.596 kb on - strand, within NOLOHH_19790 at 3903.807 kb on - strand, within NOLOHH_19790 at 3903.942 kb on + strand at 3903.943 kb on - strand at 3903.943 kb on - strand at 3903.943 kb on - strand at 3903.943 kb on - strand at 3903.943 kb on - strand at 3903.943 kb on - strand at 3903.943 kb on - strand at 3903.943 kb on - strand at 3903.943 kb on - strand at 3904.137 kb on + strand at 3904.596 kb on + strand, within NOLOHH_19800
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 3,902,214 + +0.6 3,902,219 + +0.4 3,902,313 + +0.3 3,902,569 - NOLOHH_19785 0.13 -0.7 3,902,605 - NOLOHH_19785 0.21 +0.4 3,902,769 - NOLOHH_19785 0.60 -0.0 3,902,771 - NOLOHH_19785 0.61 +0.6 3,902,817 - NOLOHH_19785 0.71 -2.6 3,902,980 - +0.0 3,902,980 - +0.3 3,903,157 - NOLOHH_19790 0.17 -1.8 3,903,566 - NOLOHH_19790 0.55 +0.5 3,903,566 - NOLOHH_19790 0.55 +1.2 3,903,596 - NOLOHH_19790 0.58 -1.5 3,903,807 - NOLOHH_19790 0.77 -0.6 3,903,942 + -1.6 3,903,943 - +0.1 3,903,943 - +0.4 3,903,943 - +1.1 3,903,943 - -0.5 3,903,943 - -0.9 3,903,943 - -0.1 3,903,943 - +0.2 3,903,943 - -0.4 3,903,943 - +1.0 3,904,137 + -1.4 3,904,596 + NOLOHH_19800 0.21 +1.6
Or see this region's nucleotide sequence