Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19010

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_19000 and NOLOHH_19005 overlap by 11 nucleotidesNOLOHH_19005 and gntT are separated by 45 nucleotidesgntT and NOLOHH_19015 are separated by 11 nucleotidesNOLOHH_19015 and osmC are separated by 34 nucleotides NOLOHH_19000: NOLOHH_19000 - succinyl-CoA--3-ketoacid-CoA transferase, at 3,733,687 to 3,734,892 _19000 NOLOHH_19005: NOLOHH_19005 - 3-hydroxybutyryl-CoA dehydrogenase, at 3,734,882 to 3,735,805 _19005 NOLOHH_19010: gntT - transporter, at 3,735,851 to 3,737,242 gntT NOLOHH_19015: NOLOHH_19015 - 3-hydroxybutyrate dehydrogenase, at 3,737,254 to 3,738,024 _19015 NOLOHH_19020: osmC - peroxiredoxin OsmC, at 3,738,059 to 3,738,490 osmC Position (kb) 3735 3736 3737 3738Strain fitness (log2 ratio) -2 -1 0 1at 3735.183 kb on - strand, within NOLOHH_19005at 3735.619 kb on + strand, within NOLOHH_19005at 3735.672 kb on + strand, within NOLOHH_19005at 3735.673 kb on - strand, within NOLOHH_19005at 3735.756 kb on - strandat 3735.827 kb on + strandat 3735.828 kb on - strandat 3736.418 kb on - strand, within gntTat 3737.068 kb on + strand, within gntTat 3737.240 kb on + strandat 3737.778 kb on + strand, within NOLOHH_19015at 3737.778 kb on + strand, within NOLOHH_19015at 3737.822 kb on + strand, within NOLOHH_19015at 3737.822 kb on + strand, within NOLOHH_19015

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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3,735,183 - NOLOHH_19005 0.33 -1.9
3,735,619 + NOLOHH_19005 0.80 -1.2
3,735,672 + NOLOHH_19005 0.85 +1.0
3,735,673 - NOLOHH_19005 0.86 -0.1
3,735,756 - -0.9
3,735,827 + +1.5
3,735,828 - -0.3
3,736,418 - gntT NOLOHH_19010 0.41 -0.1
3,737,068 + gntT NOLOHH_19010 0.87 -1.1
3,737,240 + +1.3
3,737,778 + NOLOHH_19015 0.68 +0.6
3,737,778 + NOLOHH_19015 0.68 +0.1
3,737,822 + NOLOHH_19015 0.74 -1.8
3,737,822 + NOLOHH_19015 0.74 -0.1

Or see this region's nucleotide sequence