Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18915

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddA and yddB are separated by 37 nucleotidesyddB and pqqL are separated by 56 nucleotides NOLOHH_18910: yddA - Inner membrane ABC transporter ATP-binding protein YddA, at 3,709,026 to 3,710,684 yddA NOLOHH_18915: yddB - Uncharacterized protein YddB, at 3,710,722 to 3,713,094 yddB NOLOHH_18920: pqqL - putative zinc protease PqqL, at 3,713,151 to 3,715,934 pqqL Position (kb) 3710 3711 3712 3713 3714Strain fitness (log2 ratio) -1 0 1at 3710.537 kb on + strandat 3712.073 kb on - strand, within yddBat 3712.247 kb on - strand, within yddBat 3712.578 kb on - strand, within yddBat 3712.997 kb on + strandat 3713.022 kb on + strandat 3713.022 kb on + strandat 3713.146 kb on + strandat 3713.150 kb on + strandat 3713.390 kb on + strandat 3713.390 kb on + strandat 3713.875 kb on + strand, within pqqLat 3713.994 kb on + strand, within pqqL

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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3,710,537 + -0.4
3,712,073 - yddB NOLOHH_18915 0.57 -0.4
3,712,247 - yddB NOLOHH_18915 0.64 -1.1
3,712,578 - yddB NOLOHH_18915 0.78 -0.6
3,712,997 + -1.1
3,713,022 + +0.5
3,713,022 + -0.1
3,713,146 + -0.6
3,713,150 + +0.9
3,713,390 + -0.2
3,713,390 + -0.1
3,713,875 + pqqL NOLOHH_18920 0.26 +0.3
3,713,994 + pqqL NOLOHH_18920 0.30 -1.4

Or see this region's nucleotide sequence