Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18325

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntintQ and NOLOHH_18325 are separated by 34 nucleotidesNOLOHH_18325 and dnaQ are separated by 87 nucleotides NOLOHH_18320: intQ - Putative defective protein IntQ, at 3,600,332 to 3,601,612 intQ NOLOHH_18325: NOLOHH_18325 - DNA-binding protein, at 3,601,647 to 3,601,883 _18325 NOLOHH_18330: dnaQ - exonuclease, at 3,601,971 to 3,604,442 dnaQ Position (kb) 3601 3602Strain fitness (log2 ratio) -1 0 1at 3601.166 kb on - strand, within intQat 3601.552 kb on + strandat 3601.552 kb on + strandat 3601.555 kb on - strandat 3601.645 kb on - strandat 3601.767 kb on - strand, within NOLOHH_18325at 3601.767 kb on - strand, within NOLOHH_18325at 3601.909 kb on - strandat 3602.147 kb on - strandat 3602.358 kb on - strand, within dnaQat 3602.722 kb on + strand, within dnaQat 3602.723 kb on - strand, within dnaQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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3,601,166 - intQ NOLOHH_18320 0.65 +0.3
3,601,552 + +0.8
3,601,552 + -0.8
3,601,555 - +0.7
3,601,645 - -0.7
3,601,767 - NOLOHH_18325 0.51 -0.4
3,601,767 - NOLOHH_18325 0.51 -0.7
3,601,909 - +0.6
3,602,147 - +0.6
3,602,358 - dnaQ NOLOHH_18330 0.16 +0.5
3,602,722 + dnaQ NOLOHH_18330 0.30 +0.9
3,602,723 - dnaQ NOLOHH_18330 0.30 +1.6

Or see this region's nucleotide sequence