Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18010

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntanmK and mliC are separated by 103 nucleotidesmliC and pdxH are separated by 58 nucleotidespdxH and tyrS are separated by 128 nucleotides NOLOHH_18005: anmK - anhydro-N-acetylmuramic acid kinase, at 3,533,614 to 3,534,723 anmK NOLOHH_18010: mliC - C-type lysozyme inhibitor, at 3,534,827 to 3,535,150 mliC NOLOHH_18015: pdxH - pyridoxamine 5'-phosphate oxidase, at 3,535,209 to 3,535,865 pdxH NOLOHH_18020: tyrS - tyrosine--tRNA ligase, at 3,535,994 to 3,537,268 tyrS Position (kb) 3534 3535 3536Strain fitness (log2 ratio) -2 -1 0 1 2at 3533.883 kb on + strand, within anmKat 3533.884 kb on - strand, within anmKat 3533.885 kb on + strand, within anmKat 3533.885 kb on + strand, within anmKat 3534.307 kb on + strand, within anmKat 3534.351 kb on + strand, within anmKat 3534.355 kb on + strand, within anmKat 3534.377 kb on + strand, within anmKat 3534.510 kb on + strand, within anmKat 3534.703 kb on - strandat 3534.733 kb on + strandat 3535.002 kb on + strand, within mliCat 3535.058 kb on + strand, within mliCat 3535.977 kb on + strandat 3535.979 kb on + strandat 3535.979 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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3,533,883 + anmK NOLOHH_18005 0.24 +2.7
3,533,884 - anmK NOLOHH_18005 0.24 -0.7
3,533,885 + anmK NOLOHH_18005 0.24 -0.4
3,533,885 + anmK NOLOHH_18005 0.24 +1.2
3,534,307 + anmK NOLOHH_18005 0.62 -2.2
3,534,351 + anmK NOLOHH_18005 0.66 -0.0
3,534,355 + anmK NOLOHH_18005 0.67 +0.2
3,534,377 + anmK NOLOHH_18005 0.69 -0.4
3,534,510 + anmK NOLOHH_18005 0.81 +0.1
3,534,703 - +0.2
3,534,733 + -1.8
3,535,002 + mliC NOLOHH_18010 0.54 -0.4
3,535,058 + mliC NOLOHH_18010 0.71 -1.8
3,535,977 + -0.6
3,535,979 + -0.8
3,535,979 + -0.6

Or see this region's nucleotide sequence