Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt btuC and btuE are separated by 62 nucleotides btuE and btuD overlap by 1 nucleotides btuD and nlpC are separated by 77 nucleotides nlpC and ydiV are separated by 246 nucleotides
NOLOHH_17620: btuC - vitamin B12 ABC transporter permease BtuC, at 3,458,065 to 3,459,045
btuC
NOLOHH_17625: btuE - bifunctional thioredoxin/glutathione peroxidase, at 3,459,108 to 3,459,659
btuE
NOLOHH_17630: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 3,459,659 to 3,460,408
btuD
NOLOHH_17635: nlpC - putative endopeptidase NlpC, at 3,460,486 to 3,460,950
nlpC
NOLOHH_17640: ydiV - anti-FlhDC factor, at 3,461,197 to 3,461,910
ydiV
Position (kb)
3459
3460
3461 Strain fitness (log2 ratio)
-2
-1
0
1 at 3458.700 kb on + strand, within btuC at 3458.850 kb on + strand, within btuC at 3458.888 kb on + strand, within btuC at 3459.062 kb on + strand at 3459.405 kb on - strand, within btuE at 3459.533 kb on + strand, within btuE at 3459.657 kb on + strand at 3459.678 kb on + strand at 3459.678 kb on + strand at 3459.935 kb on + strand, within btuD at 3459.959 kb on - strand, within btuD at 3460.275 kb on + strand, within btuD at 3460.912 kb on + strand at 3460.993 kb on - strand at 3461.003 kb on - strand at 3461.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 3,458,700 + btuC NOLOHH_17620 0.65 +1.5 3,458,850 + btuC NOLOHH_17620 0.80 +0.7 3,458,888 + btuC NOLOHH_17620 0.84 +0.6 3,459,062 + +0.7 3,459,405 - btuE NOLOHH_17625 0.54 -0.7 3,459,533 + btuE NOLOHH_17625 0.77 +0.8 3,459,657 + +0.4 3,459,678 + +0.3 3,459,678 + +0.3 3,459,935 + btuD NOLOHH_17630 0.37 -0.9 3,459,959 - btuD NOLOHH_17630 0.40 -1.9 3,460,275 + btuD NOLOHH_17630 0.82 +0.6 3,460,912 + -0.9 3,460,993 - -0.1 3,461,003 - +0.5 3,461,155 + +0.7
Or see this region's nucleotide sequence