Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16095

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_16085 and NOLOHH_16090 are separated by 462 nucleotidesNOLOHH_16090 and NOLOHH_16095 overlap by 4 nucleotidesNOLOHH_16095 and NOLOHH_16100 are separated by 811 nucleotides NOLOHH_16085: NOLOHH_16085 - PLD phosphodiesterase domain-containing protein, at 3,165,941 to 3,169,534 _16085 NOLOHH_16090: NOLOHH_16090 - Tyr recombinase domain-containing protein, at 3,169,997 to 3,170,425 _16090 NOLOHH_16095: NOLOHH_16095 - integrase arm-type DNA-binding domain-containing protein, at 3,170,422 to 3,171,258 _16095 NOLOHH_16100: NOLOHH_16100 - integrase, at 3,172,070 to 3,173,344 _16100 Position (kb) 3170 3171 3172Strain fitness (log2 ratio) -2 -1 0 1 2at 3169.463 kb on - strandat 3169.684 kb on + strandat 3169.684 kb on + strandat 3169.684 kb on + strandat 3169.685 kb on - strandat 3169.685 kb on - strandat 3169.685 kb on - strandat 3169.716 kb on + strandat 3169.736 kb on + strandat 3169.753 kb on + strandat 3169.753 kb on + strandat 3169.753 kb on + strandat 3169.757 kb on + strandat 3169.757 kb on + strandat 3169.757 kb on + strandat 3169.757 kb on + strandat 3169.758 kb on - strandat 3169.758 kb on - strandat 3169.758 kb on - strandat 3169.777 kb on + strandat 3169.789 kb on - strandat 3169.789 kb on - strandat 3169.834 kb on - strandat 3169.856 kb on + strandat 3169.856 kb on + strandat 3169.860 kb on + strandat 3169.922 kb on - strandat 3170.023 kb on - strandat 3170.028 kb on + strandat 3170.029 kb on - strandat 3170.029 kb on - strandat 3170.117 kb on - strand, within NOLOHH_16090at 3170.123 kb on - strand, within NOLOHH_16090at 3170.125 kb on - strand, within NOLOHH_16090at 3170.125 kb on - strand, within NOLOHH_16090at 3170.172 kb on - strand, within NOLOHH_16090at 3170.213 kb on - strand, within NOLOHH_16090at 3170.258 kb on - strand, within NOLOHH_16090at 3170.354 kb on - strand, within NOLOHH_16090at 3170.358 kb on - strand, within NOLOHH_16090at 3170.358 kb on - strand, within NOLOHH_16090at 3170.375 kb on - strand, within NOLOHH_16090at 3170.379 kb on - strand, within NOLOHH_16090at 3170.491 kb on - strandat 3170.598 kb on + strand, within NOLOHH_16095at 3170.600 kb on + strand, within NOLOHH_16095at 3170.608 kb on + strand, within NOLOHH_16095at 3170.611 kb on - strand, within NOLOHH_16095at 3170.863 kb on - strand, within NOLOHH_16095at 3170.890 kb on + strand, within NOLOHH_16095at 3170.910 kb on - strand, within NOLOHH_16095at 3171.586 kb on + strandat 3172.055 kb on - strandat 3172.210 kb on - strand, within NOLOHH_16100

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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3,169,463 - -0.6
3,169,684 + -0.7
3,169,684 + -1.7
3,169,684 + -0.6
3,169,685 - -0.2
3,169,685 - -1.7
3,169,685 - +0.3
3,169,716 + +1.5
3,169,736 + +0.4
3,169,753 + -0.7
3,169,753 + +0.1
3,169,753 + +1.3
3,169,757 + +0.4
3,169,757 + -0.4
3,169,757 + +0.2
3,169,757 + +1.6
3,169,758 - -0.1
3,169,758 - -0.1
3,169,758 - -0.7
3,169,777 + +1.4
3,169,789 - +0.7
3,169,789 - +2.3
3,169,834 - +1.4
3,169,856 + +1.3
3,169,856 + -1.4
3,169,860 + -0.3
3,169,922 - -0.3
3,170,023 - -0.6
3,170,028 + +0.2
3,170,029 - -0.8
3,170,029 - -0.3
3,170,117 - NOLOHH_16090 0.28 -1.3
3,170,123 - NOLOHH_16090 0.29 -0.4
3,170,125 - NOLOHH_16090 0.30 -1.4
3,170,125 - NOLOHH_16090 0.30 +0.6
3,170,172 - NOLOHH_16090 0.41 -0.2
3,170,213 - NOLOHH_16090 0.50 +0.3
3,170,258 - NOLOHH_16090 0.61 -0.1
3,170,354 - NOLOHH_16090 0.83 +2.0
3,170,358 - NOLOHH_16090 0.84 +0.3
3,170,358 - NOLOHH_16090 0.84 +1.0
3,170,375 - NOLOHH_16090 0.88 -0.9
3,170,379 - NOLOHH_16090 0.89 -0.2
3,170,491 - -0.1
3,170,598 + NOLOHH_16095 0.21 +0.1
3,170,600 + NOLOHH_16095 0.21 -1.0
3,170,608 + NOLOHH_16095 0.22 -0.7
3,170,611 - NOLOHH_16095 0.23 -2.5
3,170,863 - NOLOHH_16095 0.53 +0.7
3,170,890 + NOLOHH_16095 0.56 -1.0
3,170,910 - NOLOHH_16095 0.58 -1.1
3,171,586 + +0.0
3,172,055 - -0.1
3,172,210 - NOLOHH_16100 0.11 +0.7

Or see this region's nucleotide sequence