Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_16085 and NOLOHH_16090 are separated by 462 nucleotides NOLOHH_16090 and NOLOHH_16095 overlap by 4 nucleotides NOLOHH_16095 and NOLOHH_16100 are separated by 811 nucleotides
NOLOHH_16085: NOLOHH_16085 - PLD phosphodiesterase domain-containing protein, at 3,165,941 to 3,169,534
_16085
NOLOHH_16090: NOLOHH_16090 - Tyr recombinase domain-containing protein, at 3,169,997 to 3,170,425
_16090
NOLOHH_16095: NOLOHH_16095 - integrase arm-type DNA-binding domain-containing protein, at 3,170,422 to 3,171,258
_16095
NOLOHH_16100: NOLOHH_16100 - integrase, at 3,172,070 to 3,173,344
_16100
Position (kb)
3170
3171
3172 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3169.463 kb on - strand at 3169.684 kb on + strand at 3169.684 kb on + strand at 3169.684 kb on + strand at 3169.685 kb on - strand at 3169.685 kb on - strand at 3169.685 kb on - strand at 3169.716 kb on + strand at 3169.736 kb on + strand at 3169.753 kb on + strand at 3169.753 kb on + strand at 3169.753 kb on + strand at 3169.757 kb on + strand at 3169.757 kb on + strand at 3169.757 kb on + strand at 3169.757 kb on + strand at 3169.758 kb on - strand at 3169.758 kb on - strand at 3169.758 kb on - strand at 3169.777 kb on + strand at 3169.789 kb on - strand at 3169.789 kb on - strand at 3169.834 kb on - strand at 3169.856 kb on + strand at 3169.856 kb on + strand at 3169.860 kb on + strand at 3169.922 kb on - strand at 3170.023 kb on - strand at 3170.028 kb on + strand at 3170.029 kb on - strand at 3170.029 kb on - strand at 3170.117 kb on - strand, within NOLOHH_16090 at 3170.123 kb on - strand, within NOLOHH_16090 at 3170.125 kb on - strand, within NOLOHH_16090 at 3170.125 kb on - strand, within NOLOHH_16090 at 3170.172 kb on - strand, within NOLOHH_16090 at 3170.213 kb on - strand, within NOLOHH_16090 at 3170.258 kb on - strand, within NOLOHH_16090 at 3170.354 kb on - strand, within NOLOHH_16090 at 3170.358 kb on - strand, within NOLOHH_16090 at 3170.358 kb on - strand, within NOLOHH_16090 at 3170.375 kb on - strand, within NOLOHH_16090 at 3170.379 kb on - strand, within NOLOHH_16090 at 3170.491 kb on - strand at 3170.598 kb on + strand, within NOLOHH_16095 at 3170.600 kb on + strand, within NOLOHH_16095 at 3170.608 kb on + strand, within NOLOHH_16095 at 3170.611 kb on - strand, within NOLOHH_16095 at 3170.863 kb on - strand, within NOLOHH_16095 at 3170.890 kb on + strand, within NOLOHH_16095 at 3170.910 kb on - strand, within NOLOHH_16095 at 3171.586 kb on + strand at 3172.055 kb on - strand at 3172.210 kb on - strand, within NOLOHH_16100
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 3,169,463 - -0.6 3,169,684 + -0.7 3,169,684 + -1.7 3,169,684 + -0.6 3,169,685 - -0.2 3,169,685 - -1.7 3,169,685 - +0.3 3,169,716 + +1.5 3,169,736 + +0.4 3,169,753 + -0.7 3,169,753 + +0.1 3,169,753 + +1.3 3,169,757 + +0.4 3,169,757 + -0.4 3,169,757 + +0.2 3,169,757 + +1.6 3,169,758 - -0.1 3,169,758 - -0.1 3,169,758 - -0.7 3,169,777 + +1.4 3,169,789 - +0.7 3,169,789 - +2.3 3,169,834 - +1.4 3,169,856 + +1.3 3,169,856 + -1.4 3,169,860 + -0.3 3,169,922 - -0.3 3,170,023 - -0.6 3,170,028 + +0.2 3,170,029 - -0.8 3,170,029 - -0.3 3,170,117 - NOLOHH_16090 0.28 -1.3 3,170,123 - NOLOHH_16090 0.29 -0.4 3,170,125 - NOLOHH_16090 0.30 -1.4 3,170,125 - NOLOHH_16090 0.30 +0.6 3,170,172 - NOLOHH_16090 0.41 -0.2 3,170,213 - NOLOHH_16090 0.50 +0.3 3,170,258 - NOLOHH_16090 0.61 -0.1 3,170,354 - NOLOHH_16090 0.83 +2.0 3,170,358 - NOLOHH_16090 0.84 +0.3 3,170,358 - NOLOHH_16090 0.84 +1.0 3,170,375 - NOLOHH_16090 0.88 -0.9 3,170,379 - NOLOHH_16090 0.89 -0.2 3,170,491 - -0.1 3,170,598 + NOLOHH_16095 0.21 +0.1 3,170,600 + NOLOHH_16095 0.21 -1.0 3,170,608 + NOLOHH_16095 0.22 -0.7 3,170,611 - NOLOHH_16095 0.23 -2.5 3,170,863 - NOLOHH_16095 0.53 +0.7 3,170,890 + NOLOHH_16095 0.56 -1.0 3,170,910 - NOLOHH_16095 0.58 -1.1 3,171,586 + +0.0 3,172,055 - -0.1 3,172,210 - NOLOHH_16100 0.11 +0.7
Or see this region's nucleotide sequence