Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_15730 and galF are separated by 242 nucleotides galF and NOLOHH_15740 are separated by 360 nucleotides NOLOHH_15740 and neuB are separated by 4 nucleotides
NOLOHH_15730: NOLOHH_15730 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 3,099,734 to 3,100,729
_15730
NOLOHH_15735: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 3,100,972 to 3,101,865
galF
NOLOHH_15740: NOLOHH_15740 - shikimate dehydrogenase, at 3,102,226 to 3,102,846
_15740
NOLOHH_15745: neuB - N-acetylneuraminate synthase, at 3,102,851 to 3,103,891
neuB
Position (kb)
3100
3101
3102 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3099.977 kb on + strand, within NOLOHH_15730 at 3100.042 kb on + strand, within NOLOHH_15730 at 3100.051 kb on + strand, within NOLOHH_15730 at 3100.138 kb on + strand, within NOLOHH_15730 at 3100.138 kb on + strand, within NOLOHH_15730 at 3100.138 kb on + strand, within NOLOHH_15730 at 3100.172 kb on + strand, within NOLOHH_15730 at 3100.253 kb on + strand, within NOLOHH_15730 at 3100.253 kb on + strand, within NOLOHH_15730 at 3100.255 kb on + strand, within NOLOHH_15730 at 3100.288 kb on + strand, within NOLOHH_15730 at 3100.288 kb on + strand, within NOLOHH_15730 at 3100.313 kb on + strand, within NOLOHH_15730 at 3100.313 kb on + strand, within NOLOHH_15730 at 3100.313 kb on + strand, within NOLOHH_15730 at 3100.313 kb on + strand, within NOLOHH_15730 at 3100.313 kb on + strand, within NOLOHH_15730 at 3100.315 kb on + strand, within NOLOHH_15730 at 3100.315 kb on + strand, within NOLOHH_15730 at 3100.328 kb on + strand, within NOLOHH_15730 at 3100.358 kb on + strand, within NOLOHH_15730 at 3100.396 kb on + strand, within NOLOHH_15730 at 3100.477 kb on + strand, within NOLOHH_15730 at 3100.477 kb on + strand, within NOLOHH_15730 at 3100.525 kb on + strand, within NOLOHH_15730 at 3100.540 kb on + strand, within NOLOHH_15730 at 3100.645 kb on + strand at 3100.645 kb on + strand at 3100.645 kb on + strand at 3100.679 kb on + strand at 3100.710 kb on + strand at 3100.710 kb on + strand at 3100.710 kb on + strand at 3100.710 kb on + strand at 3100.786 kb on + strand at 3100.798 kb on + strand at 3100.889 kb on + strand at 3100.899 kb on + strand at 3100.899 kb on + strand at 3100.901 kb on + strand at 3100.901 kb on + strand at 3100.901 kb on + strand at 3100.901 kb on + strand at 3100.901 kb on + strand at 3100.903 kb on + strand at 3100.903 kb on + strand at 3101.019 kb on + strand at 3101.019 kb on + strand at 3101.019 kb on + strand at 3101.086 kb on + strand, within galF at 3101.182 kb on + strand, within galF at 3101.315 kb on + strand, within galF at 3101.315 kb on + strand, within galF at 3101.676 kb on + strand, within galF at 3101.776 kb on + strand at 3101.776 kb on + strand at 3101.778 kb on + strand at 3101.778 kb on + strand at 3101.778 kb on + strand at 3102.660 kb on + strand, within NOLOHH_15740
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 3,099,977 + NOLOHH_15730 0.24 -4.1 3,100,042 + NOLOHH_15730 0.31 -5.8 3,100,051 + NOLOHH_15730 0.32 -5.0 3,100,138 + NOLOHH_15730 0.41 -4.7 3,100,138 + NOLOHH_15730 0.41 -4.4 3,100,138 + NOLOHH_15730 0.41 -4.6 3,100,172 + NOLOHH_15730 0.44 -2.3 3,100,253 + NOLOHH_15730 0.52 -2.5 3,100,253 + NOLOHH_15730 0.52 -4.8 3,100,255 + NOLOHH_15730 0.52 -3.9 3,100,288 + NOLOHH_15730 0.56 -0.7 3,100,288 + NOLOHH_15730 0.56 -4.0 3,100,313 + NOLOHH_15730 0.58 -4.5 3,100,313 + NOLOHH_15730 0.58 -2.7 3,100,313 + NOLOHH_15730 0.58 -0.5 3,100,313 + NOLOHH_15730 0.58 -4.3 3,100,313 + NOLOHH_15730 0.58 -1.4 3,100,315 + NOLOHH_15730 0.58 -4.4 3,100,315 + NOLOHH_15730 0.58 -2.2 3,100,328 + NOLOHH_15730 0.60 -5.7 3,100,358 + NOLOHH_15730 0.63 -2.4 3,100,396 + NOLOHH_15730 0.66 -3.1 3,100,477 + NOLOHH_15730 0.75 -4.8 3,100,477 + NOLOHH_15730 0.75 -0.7 3,100,525 + NOLOHH_15730 0.79 -4.5 3,100,540 + NOLOHH_15730 0.81 -2.8 3,100,645 + -3.5 3,100,645 + -4.1 3,100,645 + -3.2 3,100,679 + -2.6 3,100,710 + -5.3 3,100,710 + -4.6 3,100,710 + -5.2 3,100,710 + -1.6 3,100,786 + +0.5 3,100,798 + +0.2 3,100,889 + -3.3 3,100,899 + +0.4 3,100,899 + -0.1 3,100,901 + -0.5 3,100,901 + +0.2 3,100,901 + -0.8 3,100,901 + -0.6 3,100,901 + +0.7 3,100,903 + +0.1 3,100,903 + -1.1 3,101,019 + -0.9 3,101,019 + -3.8 3,101,019 + -2.6 3,101,086 + galF NOLOHH_15735 0.13 -2.6 3,101,182 + galF NOLOHH_15735 0.23 -2.6 3,101,315 + galF NOLOHH_15735 0.38 -2.3 3,101,315 + galF NOLOHH_15735 0.38 -0.4 3,101,676 + galF NOLOHH_15735 0.79 +0.1 3,101,776 + -0.3 3,101,776 + +0.6 3,101,778 + -0.2 3,101,778 + +0.2 3,101,778 + -0.7 3,102,660 + NOLOHH_15740 0.70 -0.7
Or see this region's nucleotide sequence