Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14505

Experiment: Bas21

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnuoI and nuoJ are separated by 11 nucleotidesnuoJ and nuoK overlap by 4 nucleotidesnuoK and nuoL overlap by 4 nucleotides NOLOHH_14495: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 2,825,554 to 2,826,096 nuoI NOLOHH_14500: nuoJ - NADH-quinone oxidoreductase subunit J, at 2,826,108 to 2,826,662 nuoJ NOLOHH_14505: nuoK - NADH-quinone oxidoreductase subunit NuoK, at 2,826,659 to 2,826,961 nuoK NOLOHH_14510: nuoL - NADH-quinone oxidoreductase subunit L, at 2,826,958 to 2,828,799 nuoL Position (kb) 2826 2827Strain fitness (log2 ratio) -2 -1 0 1 2at 2825.743 kb on - strand, within nuoIat 2825.775 kb on + strand, within nuoIat 2825.926 kb on + strand, within nuoIat 2825.926 kb on + strand, within nuoIat 2825.927 kb on - strand, within nuoIat 2825.996 kb on - strand, within nuoIat 2825.998 kb on - strand, within nuoIat 2826.005 kb on - strand, within nuoIat 2826.039 kb on + strand, within nuoIat 2826.145 kb on + strandat 2826.145 kb on + strandat 2826.145 kb on + strandat 2826.174 kb on - strand, within nuoJat 2826.199 kb on - strand, within nuoJat 2826.199 kb on - strand, within nuoJat 2826.207 kb on - strand, within nuoJat 2826.282 kb on + strand, within nuoJat 2826.296 kb on + strand, within nuoJat 2826.500 kb on + strand, within nuoJat 2826.500 kb on + strand, within nuoJat 2826.500 kb on + strand, within nuoJat 2826.516 kb on + strand, within nuoJat 2826.520 kb on + strand, within nuoJat 2826.542 kb on + strand, within nuoJat 2826.542 kb on + strand, within nuoJat 2826.543 kb on - strand, within nuoJat 2826.544 kb on + strand, within nuoJat 2826.748 kb on + strand, within nuoKat 2826.775 kb on + strand, within nuoKat 2826.842 kb on + strand, within nuoKat 2826.842 kb on + strand, within nuoKat 2826.843 kb on - strand, within nuoKat 2826.843 kb on - strand, within nuoKat 2826.843 kb on - strand, within nuoKat 2827.136 kb on - strandat 2827.177 kb on - strand, within nuoLat 2827.189 kb on - strand, within nuoLat 2827.252 kb on - strand, within nuoLat 2827.261 kb on + strand, within nuoLat 2827.261 kb on + strand, within nuoLat 2827.261 kb on + strand, within nuoLat 2827.261 kb on + strand, within nuoLat 2827.261 kb on + strand, within nuoLat 2827.262 kb on - strand, within nuoLat 2827.262 kb on - strand, within nuoLat 2827.262 kb on - strand, within nuoLat 2827.273 kb on + strand, within nuoLat 2827.273 kb on + strand, within nuoLat 2827.273 kb on + strand, within nuoLat 2827.294 kb on + strand, within nuoLat 2827.295 kb on - strand, within nuoLat 2827.341 kb on - strand, within nuoLat 2827.341 kb on - strand, within nuoLat 2827.375 kb on + strand, within nuoLat 2827.375 kb on + strand, within nuoLat 2827.426 kb on + strand, within nuoLat 2827.430 kb on - strand, within nuoLat 2827.523 kb on - strand, within nuoLat 2827.910 kb on - strand, within nuoL

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
remove
2,825,743 - nuoI NOLOHH_14495 0.35 +0.8
2,825,775 + nuoI NOLOHH_14495 0.41 -0.5
2,825,926 + nuoI NOLOHH_14495 0.69 -0.7
2,825,926 + nuoI NOLOHH_14495 0.69 -0.7
2,825,927 - nuoI NOLOHH_14495 0.69 -0.2
2,825,996 - nuoI NOLOHH_14495 0.81 -0.9
2,825,998 - nuoI NOLOHH_14495 0.82 +0.9
2,826,005 - nuoI NOLOHH_14495 0.83 +0.4
2,826,039 + nuoI NOLOHH_14495 0.89 +0.0
2,826,145 + -0.7
2,826,145 + -1.6
2,826,145 + +0.2
2,826,174 - nuoJ NOLOHH_14500 0.12 -2.5
2,826,199 - nuoJ NOLOHH_14500 0.16 -1.0
2,826,199 - nuoJ NOLOHH_14500 0.16 -0.5
2,826,207 - nuoJ NOLOHH_14500 0.18 -0.2
2,826,282 + nuoJ NOLOHH_14500 0.31 -1.5
2,826,296 + nuoJ NOLOHH_14500 0.34 +0.9
2,826,500 + nuoJ NOLOHH_14500 0.71 -0.1
2,826,500 + nuoJ NOLOHH_14500 0.71 +2.1
2,826,500 + nuoJ NOLOHH_14500 0.71 +0.3
2,826,516 + nuoJ NOLOHH_14500 0.74 -0.6
2,826,520 + nuoJ NOLOHH_14500 0.74 -1.9
2,826,542 + nuoJ NOLOHH_14500 0.78 -1.9
2,826,542 + nuoJ NOLOHH_14500 0.78 -1.3
2,826,543 - nuoJ NOLOHH_14500 0.78 -0.8
2,826,544 + nuoJ NOLOHH_14500 0.79 -0.9
2,826,748 + nuoK NOLOHH_14505 0.29 +0.5
2,826,775 + nuoK NOLOHH_14505 0.38 -0.3
2,826,842 + nuoK NOLOHH_14505 0.60 -1.1
2,826,842 + nuoK NOLOHH_14505 0.60 -0.6
2,826,843 - nuoK NOLOHH_14505 0.61 -0.4
2,826,843 - nuoK NOLOHH_14505 0.61 -0.9
2,826,843 - nuoK NOLOHH_14505 0.61 -1.1
2,827,136 - -1.7
2,827,177 - nuoL NOLOHH_14510 0.12 -0.3
2,827,189 - nuoL NOLOHH_14510 0.13 +0.3
2,827,252 - nuoL NOLOHH_14510 0.16 -1.5
2,827,261 + nuoL NOLOHH_14510 0.16 -2.6
2,827,261 + nuoL NOLOHH_14510 0.16 -0.1
2,827,261 + nuoL NOLOHH_14510 0.16 +0.7
2,827,261 + nuoL NOLOHH_14510 0.16 +2.1
2,827,261 + nuoL NOLOHH_14510 0.16 +0.2
2,827,262 - nuoL NOLOHH_14510 0.17 -0.7
2,827,262 - nuoL NOLOHH_14510 0.17 -1.3
2,827,262 - nuoL NOLOHH_14510 0.17 -0.5
2,827,273 + nuoL NOLOHH_14510 0.17 -1.3
2,827,273 + nuoL NOLOHH_14510 0.17 +0.3
2,827,273 + nuoL NOLOHH_14510 0.17 -1.0
2,827,294 + nuoL NOLOHH_14510 0.18 +0.5
2,827,295 - nuoL NOLOHH_14510 0.18 +1.8
2,827,341 - nuoL NOLOHH_14510 0.21 -1.3
2,827,341 - nuoL NOLOHH_14510 0.21 -1.6
2,827,375 + nuoL NOLOHH_14510 0.23 -2.2
2,827,375 + nuoL NOLOHH_14510 0.23 -0.4
2,827,426 + nuoL NOLOHH_14510 0.25 -2.4
2,827,430 - nuoL NOLOHH_14510 0.26 -0.5
2,827,523 - nuoL NOLOHH_14510 0.31 -0.1
2,827,910 - nuoL NOLOHH_14510 0.52 -0.6

Or see this region's nucleotide sequence