Strain Fitness in Escherichia coli ECOR27 around NOLOHH_11690

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsctT and NOLOHH_11685 are separated by 8 nucleotidesNOLOHH_11685 and NOLOHH_11690 are separated by 26 nucleotidesNOLOHH_11690 and NOLOHH_11695 are separated by 60 nucleotidesNOLOHH_11695 and csgD are separated by 70 nucleotides NOLOHH_11680: sctT - type III secretion system export apparatus subunit SctT, at 2,265,229 to 2,265,996 sctT NOLOHH_11685: NOLOHH_11685 - flagellar biosynthesis protein FlhB, at 2,266,005 to 2,266,736 _11685 NOLOHH_11690: NOLOHH_11690 - flhB HrpN YscU SpaS family protein, at 2,266,763 to 2,267,125 _11690 NOLOHH_11695: NOLOHH_11695 - invasion protein, at 2,267,186 to 2,267,479 _11695 NOLOHH_11700: csgD - LuxR family transcriptional regulator, at 2,267,550 to 2,267,981 csgD Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -1 0 1at 2266.958 kb on + strand, within NOLOHH_11690at 2267.479 kb on + strandat 2267.630 kb on + strand, within csgD

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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2,266,958 + NOLOHH_11690 0.54 -0.9
2,267,479 + -0.3
2,267,630 + csgD NOLOHH_11700 0.19 -0.6

Or see this region's nucleotide sequence