Strain Fitness in Escherichia coli ECOR27 around NOLOHH_07870

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmalS and baxL are separated by 293 nucleotidesbaxL and bax overlap by 1 nucleotidesbax and xylR are separated by 107 nucleotides NOLOHH_07865: malS - alpha-amylase, at 1,508,262 to 1,510,292 malS NOLOHH_07870: baxL - Putative translational regulatory protein BaxL, at 1,510,586 to 1,510,612 baxL NOLOHH_07875: bax - protein bax, at 1,510,612 to 1,511,436 bax NOLOHH_07880: xylR - DNA-binding transcriptional regulator XylR, at 1,511,544 to 1,512,722 xylR Position (kb) 1510 1511Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1509.610 kb on - strand, within malSat 1509.644 kb on + strand, within malSat 1509.645 kb on - strand, within malSat 1509.645 kb on - strand, within malSat 1509.653 kb on + strand, within malSat 1509.654 kb on - strand, within malSat 1509.665 kb on - strand, within malSat 1509.665 kb on - strand, within malSat 1509.665 kb on - strand, within malSat 1509.678 kb on - strand, within malSat 1509.718 kb on + strand, within malSat 1509.719 kb on - strand, within malSat 1509.719 kb on - strand, within malSat 1509.731 kb on + strand, within malSat 1509.784 kb on - strand, within malSat 1509.810 kb on + strand, within malSat 1509.810 kb on + strand, within malSat 1509.810 kb on + strand, within malSat 1509.811 kb on - strand, within malSat 1509.811 kb on - strand, within malSat 1509.816 kb on + strand, within malSat 1509.816 kb on + strand, within malSat 1509.816 kb on + strand, within malSat 1509.817 kb on - strand, within malSat 1509.854 kb on - strand, within malSat 1510.011 kb on + strand, within malSat 1510.012 kb on - strand, within malSat 1510.012 kb on - strand, within malSat 1510.012 kb on - strand, within malSat 1510.012 kb on - strand, within malSat 1510.012 kb on - strand, within malSat 1510.022 kb on + strand, within malSat 1510.023 kb on - strand, within malSat 1510.023 kb on - strand, within malSat 1510.023 kb on - strand, within malSat 1510.023 kb on - strand, within malSat 1510.023 kb on - strand, within malSat 1510.025 kb on - strand, within malSat 1510.025 kb on - strand, within malSat 1510.025 kb on - strand, within malSat 1510.025 kb on - strand, within malSat 1510.067 kb on + strand, within malSat 1510.068 kb on - strand, within malSat 1510.068 kb on - strand, within malSat 1510.141 kb on - strandat 1510.157 kb on + strandat 1510.158 kb on - strandat 1510.158 kb on - strandat 1510.307 kb on + strandat 1510.308 kb on - strandat 1510.369 kb on - strandat 1510.369 kb on - strandat 1510.485 kb on + strandat 1510.486 kb on - strandat 1510.486 kb on - strandat 1510.486 kb on - strandat 1510.486 kb on - strandat 1510.527 kb on + strandat 1510.527 kb on + strandat 1510.537 kb on - strandat 1510.572 kb on + strandat 1510.573 kb on - strandat 1510.574 kb on + strandat 1510.574 kb on + strandat 1510.575 kb on - strandat 1510.575 kb on - strandat 1510.591 kb on + strand, within baxLat 1510.591 kb on + strand, within baxLat 1510.628 kb on + strandat 1510.636 kb on + strandat 1510.653 kb on + strandat 1510.653 kb on + strandat 1510.653 kb on + strandat 1510.653 kb on + strandat 1510.653 kb on + strandat 1510.653 kb on + strandat 1510.653 kb on + strandat 1510.654 kb on - strandat 1510.654 kb on - strandat 1510.654 kb on - strandat 1510.654 kb on - strandat 1510.659 kb on - strandat 1510.730 kb on + strand, within baxat 1510.730 kb on + strand, within baxat 1510.730 kb on + strand, within baxat 1510.730 kb on + strand, within baxat 1510.730 kb on + strand, within baxat 1510.730 kb on + strand, within baxat 1510.730 kb on + strand, within baxat 1510.731 kb on - strand, within baxat 1510.734 kb on + strand, within baxat 1510.735 kb on - strand, within baxat 1510.740 kb on + strand, within baxat 1510.740 kb on + strand, within baxat 1510.740 kb on + strand, within baxat 1510.740 kb on + strand, within baxat 1510.741 kb on - strand, within baxat 1510.741 kb on - strand, within baxat 1510.741 kb on - strand, within baxat 1510.743 kb on + strand, within baxat 1510.743 kb on + strand, within baxat 1510.744 kb on - strand, within baxat 1510.744 kb on - strand, within baxat 1510.747 kb on - strand, within baxat 1510.754 kb on + strand, within baxat 1510.754 kb on + strand, within baxat 1510.772 kb on - strand, within baxat 1510.794 kb on + strand, within baxat 1510.794 kb on + strand, within baxat 1510.794 kb on + strand, within baxat 1510.795 kb on - strand, within baxat 1510.820 kb on - strand, within baxat 1510.870 kb on + strand, within baxat 1510.870 kb on + strand, within baxat 1510.871 kb on - strand, within baxat 1510.871 kb on - strand, within baxat 1510.987 kb on + strand, within baxat 1510.987 kb on + strand, within baxat 1510.988 kb on - strand, within baxat 1511.031 kb on + strand, within baxat 1511.031 kb on + strand, within baxat 1511.031 kb on + strand, within baxat 1511.032 kb on - strand, within baxat 1511.032 kb on - strand, within baxat 1511.032 kb on - strand, within baxat 1511.067 kb on + strand, within baxat 1511.169 kb on + strand, within baxat 1511.169 kb on + strand, within baxat 1511.170 kb on - strand, within baxat 1511.209 kb on - strand, within baxat 1511.209 kb on - strand, within baxat 1511.237 kb on - strand, within baxat 1511.245 kb on - strand, within baxat 1511.266 kb on + strand, within baxat 1511.301 kb on + strand, within baxat 1511.374 kb on + strandat 1511.374 kb on + strandat 1511.375 kb on - strandat 1511.376 kb on + strandat 1511.377 kb on - strandat 1511.379 kb on + strandat 1511.379 kb on + strandat 1511.379 kb on + strandat 1511.379 kb on + strandat 1511.380 kb on - strandat 1511.380 kb on - strandat 1511.380 kb on - strandat 1511.380 kb on - strandat 1511.380 kb on - strandat 1511.383 kb on + strandat 1511.383 kb on + strandat 1511.383 kb on + strandat 1511.399 kb on - strandat 1511.399 kb on - strandat 1511.430 kb on + strandat 1511.430 kb on + strandat 1511.431 kb on - strandat 1511.431 kb on - strandat 1511.434 kb on + strandat 1511.434 kb on + strandat 1511.434 kb on + strandat 1511.434 kb on + strandat 1511.435 kb on - strandat 1511.435 kb on - strandat 1511.435 kb on - strandat 1511.435 kb on - strandat 1511.435 kb on - strandat 1511.455 kb on + strandat 1511.455 kb on + strandat 1511.546 kb on - strandat 1511.546 kb on - strandat 1511.562 kb on - strandat 1511.565 kb on + strandat 1511.565 kb on + strandat 1511.565 kb on + strandat 1511.566 kb on - strandat 1511.566 kb on - strandat 1511.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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1,509,610 - malS NOLOHH_07865 0.66 +0.5
1,509,644 + malS NOLOHH_07865 0.68 +0.7
1,509,645 - malS NOLOHH_07865 0.68 -0.1
1,509,645 - malS NOLOHH_07865 0.68 -0.3
1,509,653 + malS NOLOHH_07865 0.68 +0.3
1,509,654 - malS NOLOHH_07865 0.69 +0.5
1,509,665 - malS NOLOHH_07865 0.69 +0.3
1,509,665 - malS NOLOHH_07865 0.69 -0.2
1,509,665 - malS NOLOHH_07865 0.69 -0.3
1,509,678 - malS NOLOHH_07865 0.70 -0.4
1,509,718 + malS NOLOHH_07865 0.72 -0.5
1,509,719 - malS NOLOHH_07865 0.72 +0.3
1,509,719 - malS NOLOHH_07865 0.72 +0.2
1,509,731 + malS NOLOHH_07865 0.72 -0.2
1,509,784 - malS NOLOHH_07865 0.75 -1.0
1,509,810 + malS NOLOHH_07865 0.76 +0.1
1,509,810 + malS NOLOHH_07865 0.76 +0.4
1,509,810 + malS NOLOHH_07865 0.76 +0.3
1,509,811 - malS NOLOHH_07865 0.76 +0.4
1,509,811 - malS NOLOHH_07865 0.76 -0.4
1,509,816 + malS NOLOHH_07865 0.77 -0.0
1,509,816 + malS NOLOHH_07865 0.77 +0.2
1,509,816 + malS NOLOHH_07865 0.77 -0.2
1,509,817 - malS NOLOHH_07865 0.77 +1.6
1,509,854 - malS NOLOHH_07865 0.78 -0.6
1,510,011 + malS NOLOHH_07865 0.86 +1.1
1,510,012 - malS NOLOHH_07865 0.86 +0.4
1,510,012 - malS NOLOHH_07865 0.86 +0.0
1,510,012 - malS NOLOHH_07865 0.86 +0.1
1,510,012 - malS NOLOHH_07865 0.86 +0.1
1,510,012 - malS NOLOHH_07865 0.86 +0.4
1,510,022 + malS NOLOHH_07865 0.87 +0.1
1,510,023 - malS NOLOHH_07865 0.87 +0.2
1,510,023 - malS NOLOHH_07865 0.87 +0.1
1,510,023 - malS NOLOHH_07865 0.87 +0.1
1,510,023 - malS NOLOHH_07865 0.87 -0.3
1,510,023 - malS NOLOHH_07865 0.87 -0.1
1,510,025 - malS NOLOHH_07865 0.87 -0.3
1,510,025 - malS NOLOHH_07865 0.87 -1.0
1,510,025 - malS NOLOHH_07865 0.87 +0.3
1,510,025 - malS NOLOHH_07865 0.87 +0.7
1,510,067 + malS NOLOHH_07865 0.89 +0.1
1,510,068 - malS NOLOHH_07865 0.89 +0.3
1,510,068 - malS NOLOHH_07865 0.89 +0.4
1,510,141 - +0.5
1,510,157 + +0.4
1,510,158 - +0.5
1,510,158 - -0.6
1,510,307 + -0.7
1,510,308 - +0.4
1,510,369 - -0.5
1,510,369 - +0.0
1,510,485 + -2.3
1,510,486 - +0.3
1,510,486 - +0.0
1,510,486 - +0.9
1,510,486 - +0.6
1,510,527 + +0.2
1,510,527 + +0.1
1,510,537 - -0.4
1,510,572 + +0.5
1,510,573 - -0.4
1,510,574 + -0.2
1,510,574 + +1.0
1,510,575 - +0.5
1,510,575 - +0.4
1,510,591 + baxL NOLOHH_07870 0.19 -1.8
1,510,591 + baxL NOLOHH_07870 0.19 -0.5
1,510,628 + +0.5
1,510,636 + +0.5
1,510,653 + +0.3
1,510,653 + +0.1
1,510,653 + +0.7
1,510,653 + +0.1
1,510,653 + -0.3
1,510,653 + -0.8
1,510,653 + -0.7
1,510,654 - -1.2
1,510,654 - +1.1
1,510,654 - -0.2
1,510,654 - -0.3
1,510,659 - -0.0
1,510,730 + bax NOLOHH_07875 0.14 -0.1
1,510,730 + bax NOLOHH_07875 0.14 -0.6
1,510,730 + bax NOLOHH_07875 0.14 +0.3
1,510,730 + bax NOLOHH_07875 0.14 -0.5
1,510,730 + bax NOLOHH_07875 0.14 +0.7
1,510,730 + bax NOLOHH_07875 0.14 -0.2
1,510,730 + bax NOLOHH_07875 0.14 -1.7
1,510,731 - bax NOLOHH_07875 0.14 -0.3
1,510,734 + bax NOLOHH_07875 0.15 +0.4
1,510,735 - bax NOLOHH_07875 0.15 -0.0
1,510,740 + bax NOLOHH_07875 0.16 +0.2
1,510,740 + bax NOLOHH_07875 0.16 -1.8
1,510,740 + bax NOLOHH_07875 0.16 +0.0
1,510,740 + bax NOLOHH_07875 0.16 +0.1
1,510,741 - bax NOLOHH_07875 0.16 +1.2
1,510,741 - bax NOLOHH_07875 0.16 -0.5
1,510,741 - bax NOLOHH_07875 0.16 +0.6
1,510,743 + bax NOLOHH_07875 0.16 -0.2
1,510,743 + bax NOLOHH_07875 0.16 +0.9
1,510,744 - bax NOLOHH_07875 0.16 -0.7
1,510,744 - bax NOLOHH_07875 0.16 -0.6
1,510,747 - bax NOLOHH_07875 0.16 +0.8
1,510,754 + bax NOLOHH_07875 0.17 +0.0
1,510,754 + bax NOLOHH_07875 0.17 -0.0
1,510,772 - bax NOLOHH_07875 0.19 +0.1
1,510,794 + bax NOLOHH_07875 0.22 -0.4
1,510,794 + bax NOLOHH_07875 0.22 +1.4
1,510,794 + bax NOLOHH_07875 0.22 -0.9
1,510,795 - bax NOLOHH_07875 0.22 +0.2
1,510,820 - bax NOLOHH_07875 0.25 +0.4
1,510,870 + bax NOLOHH_07875 0.31 -0.2
1,510,870 + bax NOLOHH_07875 0.31 -0.1
1,510,871 - bax NOLOHH_07875 0.31 +0.1
1,510,871 - bax NOLOHH_07875 0.31 +0.4
1,510,987 + bax NOLOHH_07875 0.45 +0.2
1,510,987 + bax NOLOHH_07875 0.45 +0.4
1,510,988 - bax NOLOHH_07875 0.46 +1.0
1,511,031 + bax NOLOHH_07875 0.51 -0.5
1,511,031 + bax NOLOHH_07875 0.51 +0.1
1,511,031 + bax NOLOHH_07875 0.51 -0.2
1,511,032 - bax NOLOHH_07875 0.51 -0.5
1,511,032 - bax NOLOHH_07875 0.51 +0.2
1,511,032 - bax NOLOHH_07875 0.51 +0.2
1,511,067 + bax NOLOHH_07875 0.55 -0.4
1,511,169 + bax NOLOHH_07875 0.68 +0.0
1,511,169 + bax NOLOHH_07875 0.68 +0.2
1,511,170 - bax NOLOHH_07875 0.68 -0.5
1,511,209 - bax NOLOHH_07875 0.72 +0.7
1,511,209 - bax NOLOHH_07875 0.72 +1.1
1,511,237 - bax NOLOHH_07875 0.76 +0.2
1,511,245 - bax NOLOHH_07875 0.77 -0.5
1,511,266 + bax NOLOHH_07875 0.79 +0.4
1,511,301 + bax NOLOHH_07875 0.84 -0.0
1,511,374 + -0.0
1,511,374 + -0.2
1,511,375 - +0.2
1,511,376 + -0.2
1,511,377 - -0.0
1,511,379 + +0.3
1,511,379 + +0.1
1,511,379 + -0.6
1,511,379 + +0.6
1,511,380 - +0.8
1,511,380 - +0.8
1,511,380 - +0.3
1,511,380 - +0.3
1,511,380 - +0.1
1,511,383 + +0.8
1,511,383 + -0.3
1,511,383 + +0.6
1,511,399 - -0.1
1,511,399 - -1.0
1,511,430 + +0.4
1,511,430 + +0.2
1,511,431 - -0.1
1,511,431 - -0.4
1,511,434 + -1.0
1,511,434 + +0.5
1,511,434 + -0.7
1,511,434 + +0.5
1,511,435 - +0.6
1,511,435 - +0.1
1,511,435 - -0.3
1,511,435 - +0.1
1,511,435 - -0.6
1,511,455 + -0.8
1,511,455 + +0.3
1,511,546 - +0.8
1,511,546 - -0.3
1,511,562 - +0.7
1,511,565 + -0.0
1,511,565 + -1.0
1,511,565 + -3.9
1,511,566 - -0.4
1,511,566 - +0.2
1,511,597 - -0.3

Or see this region's nucleotide sequence