Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaA and mokC are separated by 528 nucleotides mokC and dnaJ are separated by 103 nucleotides dnaJ and dnaK are separated by 88 nucleotides
NOLOHH_03360: nhaA - Na+/H+ antiporter NhaA, at 592,329 to 593,495
nhaA
NOLOHH_03370: mokC - Regulatory protein MokC, at 594,024 to 594,233
mokC
NOLOHH_03375: dnaJ - molecular chaperone DnaJ, at 594,337 to 595,467
dnaJ
NOLOHH_03385: dnaK - molecular chaperone DnaK, at 595,556 to 597,472
dnaK
Position (kb) 594
595
596 Strain fitness (log2 ratio) -2
-1
0
1 at 593.414 kb on + strand at 593.442 kb on - strand at 593.519 kb on + strand at 593.649 kb on + strand at 593.669 kb on + strand at 593.685 kb on + strand at 593.690 kb on + strand at 593.713 kb on + strand at 593.734 kb on - strand at 593.769 kb on + strand at 593.821 kb on + strand at 593.835 kb on + strand at 593.921 kb on + strand at 593.921 kb on + strand at 593.921 kb on + strand at 593.922 kb on - strand at 593.922 kb on - strand at 593.924 kb on + strand at 593.996 kb on - strand at 594.000 kb on + strand at 594.021 kb on + strand at 594.021 kb on + strand at 594.021 kb on + strand at 594.021 kb on + strand at 594.022 kb on - strand at 594.022 kb on - strand at 594.023 kb on + strand at 594.023 kb on + strand at 594.038 kb on + strand at 594.038 kb on + strand at 594.038 kb on + strand at 594.038 kb on + strand at 594.038 kb on + strand at 594.039 kb on - strand at 594.039 kb on - strand at 594.039 kb on - strand at 594.039 kb on - strand at 594.039 kb on - strand at 594.039 kb on - strand at 594.039 kb on - strand at 594.051 kb on - strand, within mokC at 594.059 kb on + strand, within mokC at 594.126 kb on - strand, within mokC at 594.126 kb on - strand, within mokC at 594.231 kb on + strand at 594.279 kb on + strand at 594.295 kb on + strand at 594.296 kb on - strand at 595.272 kb on - strand, within dnaJ at 595.308 kb on - strand, within dnaJ at 595.327 kb on - strand, within dnaJ at 595.533 kb on - strand at 595.535 kb on - strand at 595.535 kb on - strand at 595.535 kb on - strand at 595.535 kb on - strand at 595.535 kb on - strand at 595.535 kb on - strand at 595.539 kb on - strand at 595.547 kb on - strand at 595.875 kb on - strand, within dnaK at 595.892 kb on - strand, within dnaK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 593,414 + +0.6 593,442 - +1.6 593,519 + -0.5 593,649 + +0.1 593,669 + +1.0 593,685 + -0.4 593,690 + +0.2 593,713 + -0.5 593,734 - +0.7 593,769 + +0.1 593,821 + +0.0 593,835 + -1.1 593,921 + -0.5 593,921 + +0.3 593,921 + -2.7 593,922 - -0.9 593,922 - +0.1 593,924 + -1.1 593,996 - +0.9 594,000 + -0.1 594,021 + -0.8 594,021 + +0.1 594,021 + -0.8 594,021 + -0.5 594,022 - -0.1 594,022 - -0.4 594,023 + -0.9 594,023 + +0.8 594,038 + -0.0 594,038 + +0.4 594,038 + +0.6 594,038 + -0.6 594,038 + -0.4 594,039 - -0.4 594,039 - -0.3 594,039 - +0.8 594,039 - +0.9 594,039 - +0.4 594,039 - -0.5 594,039 - -0.2 594,051 - mokC NOLOHH_03370 0.13 -0.2 594,059 + mokC NOLOHH_03370 0.17 +0.2 594,126 - mokC NOLOHH_03370 0.49 +0.5 594,126 - mokC NOLOHH_03370 0.49 +0.1 594,231 + +0.3 594,279 + -0.9 594,295 + +0.2 594,296 - +0.1 595,272 - dnaJ NOLOHH_03375 0.83 -2.5 595,308 - dnaJ NOLOHH_03375 0.86 -0.9 595,327 - dnaJ NOLOHH_03375 0.88 +1.3 595,533 - +1.2 595,535 - +0.5 595,535 - +0.5 595,535 - +0.2 595,535 - +0.7 595,535 - +0.5 595,535 - +0.1 595,539 - -0.0 595,547 - -1.1 595,875 - dnaK NOLOHH_03385 0.17 -1.0 595,892 - dnaK NOLOHH_03385 0.18 +0.4
Or see this region's nucleotide sequence