Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00515 and NOLOHH_00520 are separated by 15 nucleotides NOLOHH_00520 and NOLOHH_00525 are separated by 7 nucleotides NOLOHH_00525 and NOLOHH_00530 overlap by 4 nucleotides NOLOHH_00530 and fII are separated by 11 nucleotides fII and NOLOHH_00540 are separated by 11 nucleotides
NOLOHH_00515: NOLOHH_00515 - Phage minor tail protein G, at 8,328 to 8,750
_00515
NOLOHH_00520: NOLOHH_00520 - Tail tube protein, at 8,766 to 9,506
_00520
NOLOHH_00525: NOLOHH_00525 - Tail tube terminator protein, at 9,514 to 9,909
_00525
NOLOHH_00530: NOLOHH_00530 - Tail completion protein Z, at 9,906 to 10,484
_00530
NOLOHH_00535: fII - Head-tail connector protein FII, at 10,496 to 10,849
fII
NOLOHH_00540: NOLOHH_00540 - DNA-packaging protein FI, at 10,861 to 11,259
_00540
Position (kb) 9
10 Strain fitness (log2 ratio) -1
0
1 at 8.567 kb on + strand, within NOLOHH_00515 at 8.568 kb on - strand, within NOLOHH_00515 at 8.568 kb on - strand, within NOLOHH_00515 at 8.568 kb on - strand, within NOLOHH_00515 at 8.568 kb on - strand, within NOLOHH_00515 at 8.610 kb on - strand, within NOLOHH_00515 at 8.841 kb on - strand, within NOLOHH_00520 at 9.038 kb on + strand, within NOLOHH_00520 at 9.489 kb on - strand at 9.528 kb on + strand at 9.528 kb on + strand at 9.528 kb on + strand at 9.528 kb on + strand at 9.654 kb on - strand, within NOLOHH_00525 at 9.999 kb on - strand, within NOLOHH_00530 at 10.236 kb on + strand, within NOLOHH_00530 at 10.236 kb on + strand, within NOLOHH_00530 at 10.237 kb on - strand, within NOLOHH_00530 at 10.581 kb on - strand, within fII
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 8,567 + NOLOHH_00515 0.57 -1.2 8,568 - NOLOHH_00515 0.57 +0.6 8,568 - NOLOHH_00515 0.57 +0.1 8,568 - NOLOHH_00515 0.57 -0.4 8,568 - NOLOHH_00515 0.57 -0.4 8,610 - NOLOHH_00515 0.67 +0.1 8,841 - NOLOHH_00520 0.10 +0.2 9,038 + NOLOHH_00520 0.37 -0.2 9,489 - -0.3 9,528 + +0.1 9,528 + +0.3 9,528 + -0.9 9,528 + -0.2 9,654 - NOLOHH_00525 0.35 -1.0 9,999 - NOLOHH_00530 0.16 +0.2 10,236 + NOLOHH_00530 0.57 -0.5 10,236 + NOLOHH_00530 0.57 +0.3 10,237 - NOLOHH_00530 0.57 +1.2 10,581 - fII NOLOHH_00535 0.24 +0.0
Or see this region's nucleotide sequence