Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20895

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
5,144,536	-				+4.1
5,144,566	-				+0.2
5,144,597	+				+0.5
5,144,614	+				+0.1
5,144,616	+				-0.7
5,144,736	-		ABI39_RS20890	0.23	-0.9
5,144,769	+		ABI39_RS20890	0.27	-0.2
5,144,788	+		ABI39_RS20890	0.29	-1.7
5,144,925	+		ABI39_RS20890	0.45	-0.1
5,145,009	+		ABI39_RS20890	0.55	-0.7
5,145,130	+		ABI39_RS20890	0.69	-1.1
5,145,131	-		ABI39_RS20890	0.69	-0.4
5,145,131	-		ABI39_RS20890	0.69	+1.5
5,145,200	+		ABI39_RS20890	0.77	-0.2
5,145,241	-		ABI39_RS20890	0.82	-1.0
5,145,264	+		ABI39_RS20890	0.85	-1.3
5,145,264	+		ABI39_RS20890	0.85	+2.4
5,145,283	-		ABI39_RS20890	0.87	-0.4
5,145,284	+		ABI39_RS20890	0.87	+0.8
5,145,285	-		ABI39_RS20890	0.87	+3.0
5,145,287	+		ABI39_RS20890	0.88	+1.3
5,145,320	+				-0.6
5,145,403	+				+0.7
5,145,403	+				-0.4
5,145,407	+				-0.3
5,145,424	-				-1.5
5,145,425	+				-0.4
5,145,425	+				+0.1
5,145,426	-				-0.2
5,145,429	+				+2.0
5,145,430	-				+0.6
5,145,452	-				+3.1
5,145,473	+				-0.2
5,145,473	+				-0.6
5,145,473	+				-2.0
5,145,597	+				-0.2
5,145,602	+				-0.1
5,145,610	+				+1.0
5,145,612	+				+3.2
5,145,785	-		ABI39_RS20895	0.20	+0.2
5,145,821	+		ABI39_RS20895	0.22	+1.6
5,145,822	-		ABI39_RS20895	0.22	+1.1
5,145,864	-		ABI39_RS20895	0.25	+1.9
5,145,906	+		ABI39_RS20895	0.28	+1.2
5,146,112	+		ABI39_RS20895	0.41	+1.2
5,146,184	+		ABI39_RS20895	0.46	+1.3
5,146,184	+		ABI39_RS20895	0.46	+5.9
5,146,362	-		ABI39_RS20895	0.58	+0.8
5,146,374	-		ABI39_RS20895	0.59	-0.3
5,146,374	-		ABI39_RS20895	0.59	+0.1
5,146,374	-		ABI39_RS20895	0.59	+1.6
5,146,377	+		ABI39_RS20895	0.59	-0.8
5,146,391	+		ABI39_RS20895	0.60	+0.7
5,146,580	-		ABI39_RS20895	0.72	-0.6
5,146,584	+		ABI39_RS20895	0.72	-0.3
5,146,595	+		ABI39_RS20895	0.73	+0.7
5,146,651	-		ABI39_RS20895	0.77	-0.1
5,146,870	-				-0.1
5,146,870	-				-0.3
5,146,902	-				-0.6
5,146,902	-				+3.8
5,146,943	-				-1.0
5,147,024	-				+0.9
5,147,038	+				+4.5
5,147,043	+				-0.7
5,147,200	-				+2.5
5,147,220	+				-0.3
5,147,224	-				-0.9
5,147,238	+				-0.2
5,147,247	-				-0.3
5,147,284	+				-0.8
5,147,285	-				-1.6
5,147,285	-				-0.5
5,147,329	+		ABI39_RS20900	0.12	+1.1
5,147,335	+		ABI39_RS20900	0.13	-0.9
5,147,339	+		ABI39_RS20900	0.13	+1.6
5,147,374	-		ABI39_RS20900	0.17	+1.6
5,147,398	-		ABI39_RS20900	0.19	+1.8
5,147,440	+		ABI39_RS20900	0.23	-0.2
5,147,490	+		ABI39_RS20900	0.28	+1.4
5,147,695	-		ABI39_RS20900	0.48	+1.7
5,147,717	-		ABI39_RS20900	0.50	+0.5
5,147,817	+		ABI39_RS20900	0.59	-0.8
5,147,835	+		ABI39_RS20900	0.61	+2.2