Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13345

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
3,471,853	-		ABI39_RS13340	0.13	-0.9
3,471,922	-		ABI39_RS13340	0.19	+0.2
3,471,988	-		ABI39_RS13340	0.25	+1.8
3,471,991	-		ABI39_RS13340	0.25	+2.6
3,472,026	+		ABI39_RS13340	0.28	-1.9
3,472,029	+		ABI39_RS13340	0.28	-0.1
3,472,096	-		ABI39_RS13340	0.34	-1.5
3,472,237	+		ABI39_RS13340	0.46	+0.3
3,472,245	-		ABI39_RS13340	0.47	+0.2
3,472,249	-		ABI39_RS13340	0.47	-1.7
3,472,361	+		ABI39_RS13340	0.57	+2.4
3,472,427	+		ABI39_RS13340	0.63	-0.4
3,472,497	+		ABI39_RS13340	0.69	-0.9
3,472,504	-		ABI39_RS13340	0.70	-0.3
3,472,546	+		ABI39_RS13340	0.73	+1.7
3,472,573	+		ABI39_RS13340	0.76	+0.7
3,472,611	+		ABI39_RS13340	0.79	-0.7
3,472,612	-		ABI39_RS13340	0.79	+0.0
3,472,612	-		ABI39_RS13340	0.79	+0.2
3,472,682	+		ABI39_RS13340	0.85	+2.2
3,472,683	-		ABI39_RS13340	0.85	-1.8
3,472,683	-		ABI39_RS13340	0.85	-1.6
3,472,747	+				+0.2
3,472,824	-				-1.6
3,472,915	-				+1.1
3,472,919	-				+0.0
3,472,991	+		ABI39_RS13345	0.12	+7.1
3,472,992	-		ABI39_RS13345	0.12	+1.2
3,472,992	-		ABI39_RS13345	0.12	-0.0
3,472,993	+		ABI39_RS13345	0.12	+0.7
3,472,994	-		ABI39_RS13345	0.12	+2.0
3,472,998	-		ABI39_RS13345	0.13	-0.2
3,472,998	-		ABI39_RS13345	0.13	-1.1
3,473,077	-		ABI39_RS13345	0.18	-0.3
3,473,094	-		ABI39_RS13345	0.20	-1.4
3,473,094	-		ABI39_RS13345	0.20	-0.0
3,473,123	+		ABI39_RS13345	0.22	+0.9
3,473,123	+		ABI39_RS13345	0.22	-0.9
3,473,123	+		ABI39_RS13345	0.22	-1.7
3,473,141	+		ABI39_RS13345	0.23	+0.1
3,473,158	+		ABI39_RS13345	0.25	+0.7
3,473,172	-		ABI39_RS13345	0.26	-0.0
3,473,273	+		ABI39_RS13345	0.33	+2.8
3,473,277	-		ABI39_RS13345	0.33	+3.2
3,473,292	-		ABI39_RS13345	0.35	+0.0
3,473,294	-		ABI39_RS13345	0.35	+0.1
3,473,303	+		ABI39_RS13345	0.35	+3.5
3,473,310	+		ABI39_RS13345	0.36	-1.6
3,473,332	-		ABI39_RS13345	0.38	+1.5
3,473,347	-		ABI39_RS13345	0.39	-1.8
3,473,348	+		ABI39_RS13345	0.39	+0.8
3,473,352	+		ABI39_RS13345	0.39	-0.9
3,473,399	-		ABI39_RS13345	0.43	-0.4
3,473,407	+		ABI39_RS13345	0.43	-1.7
3,473,421	+		ABI39_RS13345	0.44	+1.6
3,473,422	-		ABI39_RS13345	0.44	+0.4
3,473,424	-		ABI39_RS13345	0.44	-0.7
3,473,590	+		ABI39_RS13345	0.57	-0.4
3,473,682	+		ABI39_RS13345	0.64	-0.8
3,473,682	+		ABI39_RS13345	0.64	-1.6
3,473,725	+		ABI39_RS13345	0.67	+3.2
3,473,773	-		ABI39_RS13345	0.70	+1.2
3,473,786	+		ABI39_RS13345	0.71	-0.9
3,473,793	+		ABI39_RS13345	0.72	+0.2
3,473,794	-		ABI39_RS13345	0.72	-2.1
3,473,796	-		ABI39_RS13345	0.72	-1.3
3,473,816	-		ABI39_RS13345	0.74	+5.0
3,473,916	+		ABI39_RS13345	0.81	-1.5
3,474,074	+				-1.4
3,474,075	-				-2.3
3,474,132	+				-0.1
3,474,133	-				+0.1
3,474,156	-				+1.0
3,474,162	+				+0.3
3,474,200	+				+1.1
3,474,208	-				-0.6
3,474,252	-				-1.3
3,474,349	+		ABI39_RS13350	0.15	-0.4
3,474,352	-		ABI39_RS13350	0.15	-0.4
3,474,352	-		ABI39_RS13350	0.15	-0.4
3,474,453	-		ABI39_RS13350	0.24	+0.0
3,474,476	+		ABI39_RS13350	0.26	+2.3
3,474,480	-		ABI39_RS13350	0.27	-1.9
3,474,482	-		ABI39_RS13350	0.27	-0.8
3,474,484	-		ABI39_RS13350	0.27	-0.3
3,474,501	+		ABI39_RS13350	0.28	+0.9
3,474,532	+		ABI39_RS13350	0.31	-0.1
3,474,532	+		ABI39_RS13350	0.31	-1.9
3,474,550	-		ABI39_RS13350	0.33	+1.0
3,474,557	-		ABI39_RS13350	0.33	-2.8
3,474,558	-		ABI39_RS13350	0.33	+2.8
3,474,559	-		ABI39_RS13350	0.34	-0.7
3,474,567	-		ABI39_RS13350	0.34	-0.3
3,474,600	-		ABI39_RS13350	0.37	+0.7
3,474,614	-		ABI39_RS13350	0.38	-0.0
3,474,669	+		ABI39_RS13350	0.43	+1.9
3,474,696	+		ABI39_RS13350	0.45	-0.1
3,474,696	+		ABI39_RS13350	0.45	-0.8
3,474,727	+		ABI39_RS13350	0.48	+3.2
3,474,727	+		ABI39_RS13350	0.48	-0.3
3,474,784	-		ABI39_RS13350	0.53	-1.1
3,474,788	-		ABI39_RS13350	0.53	-0.9
3,474,934	-		ABI39_RS13350	0.66	+1.1
3,474,934	-		ABI39_RS13350	0.66	-0.4
3,474,950	+		ABI39_RS13350	0.68	-0.9
3,474,964	-		ABI39_RS13350	0.69	+1.0
3,474,964	-		ABI39_RS13350	0.69	-0.7
3,475,100	+		ABI39_RS13350	0.81	+0.1
3,475,101	-		ABI39_RS13350	0.81	-0.7
3,475,132	-		ABI39_RS13350	0.83	+0.3
3,475,136	-		ABI39_RS13350	0.84	-1.8
3,475,140	-		ABI39_RS13350	0.84	-0.5
3,475,160	+		ABI39_RS13350	0.86	-1.0