Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12740

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
3,334,881	-		ABI39_RS12735	0.29	-3.0
3,334,889	-		ABI39_RS12735	0.30	-2.0
3,334,909	-		ABI39_RS12735	0.32	-2.4
3,334,971	-		ABI39_RS12735	0.38	-3.2
3,334,979	-		ABI39_RS12735	0.39	-1.6
3,335,084	+		ABI39_RS12735	0.49	+0.8
3,335,088	+		ABI39_RS12735	0.49	-3.0
3,335,088	+		ABI39_RS12735	0.49	-3.7
3,335,279	+		ABI39_RS12735	0.67	-2.7
3,335,279	+		ABI39_RS12735	0.67	-3.6
3,335,280	-		ABI39_RS12735	0.68	-3.5
3,335,297	+		ABI39_RS12735	0.69	-2.2
3,335,432	+		ABI39_RS12735	0.82	-3.0
3,335,456	-		ABI39_RS12735	0.84	-4.8
3,335,458	-		ABI39_RS12735	0.85	-1.6
3,335,619	+				-0.1
3,335,623	+				-1.8
3,335,630	+				+1.7
3,335,680	+				+1.2
3,335,703	-				+1.9
3,335,704	+				-0.9
3,335,714	-				-0.4
3,335,754	+				-0.6
3,335,804	-				-0.6
3,335,847	-				-2.6
3,335,853	+				+0.8
3,335,901	-		ABI39_RS12740	0.14	+3.4
3,335,911	-		ABI39_RS12740	0.15	+1.2
3,335,968	-		ABI39_RS12740	0.20	-1.4
3,335,972	-		ABI39_RS12740	0.21	-0.1
3,335,972	-		ABI39_RS12740	0.21	-0.8
3,335,972	-		ABI39_RS12740	0.21	+0.5
3,336,066	+		ABI39_RS12740	0.29	+0.7
3,336,067	-		ABI39_RS12740	0.30	+0.3
3,336,068	+		ABI39_RS12740	0.30	-1.8
3,336,069	-		ABI39_RS12740	0.30	+5.7
3,336,072	+		ABI39_RS12740	0.30	+0.3
3,336,073	-		ABI39_RS12740	0.30	+0.3
3,336,073	-		ABI39_RS12740	0.30	-0.3
3,336,073	-		ABI39_RS12740	0.30	+2.7
3,336,076	-		ABI39_RS12740	0.30	-1.0
3,336,090	+		ABI39_RS12740	0.32	+1.1
3,336,315	-		ABI39_RS12740	0.52	+0.0
3,336,321	+		ABI39_RS12740	0.53	+1.8
3,336,464	+		ABI39_RS12740	0.66	-0.3
3,336,469	+		ABI39_RS12740	0.67	-1.0
3,336,469	+		ABI39_RS12740	0.67	+1.2
3,336,519	+		ABI39_RS12740	0.71	-1.5
3,336,520	-		ABI39_RS12740	0.71	-0.4
3,336,629	-		ABI39_RS12740	0.81	-0.9
3,336,648	-		ABI39_RS12740	0.83	+1.3
3,336,758	-				+1.8
3,336,823	-				-0.4
3,336,951	-				+0.4
3,336,991	-				+0.1
3,337,038	+				+0.1
3,337,113	-		ABI39_RS12745	0.15	-0.7
3,337,131	-		ABI39_RS12745	0.17	+0.3
3,337,133	+		ABI39_RS12745	0.17	-0.1
3,337,141	-		ABI39_RS12745	0.18	-0.5
3,337,175	-		ABI39_RS12745	0.21	+0.7
3,337,189	-		ABI39_RS12745	0.22	+1.0
3,337,253	-		ABI39_RS12745	0.27	+0.6
3,337,310	+		ABI39_RS12745	0.32	-0.5
3,337,433	-		ABI39_RS12745	0.42	-1.3
3,337,612	+		ABI39_RS12745	0.57	-0.2
3,337,636	+		ABI39_RS12745	0.59	+0.4
3,337,712	-		ABI39_RS12745	0.65	+0.2
3,337,775	-		ABI39_RS12745	0.70	+2.0