Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10040

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
2,679,819	+		ABI39_RS10035	0.37	+0.8
2,679,864	+		ABI39_RS10035	0.41	-0.7
2,679,898	-		ABI39_RS10035	0.43	-0.9
2,680,052	-		ABI39_RS10035	0.56	-0.3
2,680,116	+		ABI39_RS10035	0.61	+1.7
2,680,186	-		ABI39_RS10035	0.67	-0.3
2,680,197	+		ABI39_RS10035	0.68	+0.2
2,680,234	-		ABI39_RS10035	0.71	-0.1
2,680,314	+		ABI39_RS10035	0.77	-1.5
2,680,314	+		ABI39_RS10035	0.77	+1.3
2,680,360	-		ABI39_RS10035	0.81	-0.6
2,680,492	+				+0.2
2,680,492	+				+0.1
2,680,590	-				+0.6
2,680,600	-				-1.1
2,680,615	+				-0.6
2,680,660	-				+0.1
2,680,706	+				-1.0
2,680,706	+				+1.5
2,680,730	+				-0.8
2,680,780	-				+1.0
2,680,785	-				-1.4
2,680,874	-				-1.3
2,681,131	-		ABI39_RS10040	0.25	-0.7
2,681,134	+		ABI39_RS10040	0.25	-0.9
2,681,136	+		ABI39_RS10040	0.25	+1.8
2,681,136	+		ABI39_RS10040	0.25	+0.1
2,681,239	+		ABI39_RS10040	0.33	-0.1
2,681,273	-		ABI39_RS10040	0.35	+1.5
2,681,402	+		ABI39_RS10040	0.45	-0.5
2,681,455	+		ABI39_RS10040	0.49	-0.9
2,681,492	-		ABI39_RS10040	0.52	-1.5
2,681,511	-		ABI39_RS10040	0.53	-0.9
2,681,534	-		ABI39_RS10040	0.55	-2.2
2,681,601	+		ABI39_RS10040	0.60	+0.6
2,681,602	-		ABI39_RS10040	0.60	-0.5
2,681,610	+		ABI39_RS10040	0.60	+1.2
2,681,611	-		ABI39_RS10040	0.60	-0.5
2,681,622	+		ABI39_RS10040	0.61	-0.6
2,681,625	+		ABI39_RS10040	0.61	+1.3
2,681,628	+		ABI39_RS10040	0.62	-1.0
2,681,629	-		ABI39_RS10040	0.62	-1.0
2,681,629	-		ABI39_RS10040	0.62	+2.3
2,681,629	-		ABI39_RS10040	0.62	-0.6
2,681,735	+		ABI39_RS10040	0.70	-1.5
2,681,855	-		ABI39_RS10040	0.78	+2.0
2,681,923	-		ABI39_RS10040	0.83	-0.3
2,681,933	+		ABI39_RS10040	0.84	+0.2
2,681,963	+		ABI39_RS10040	0.86	+0.5
2,682,029	+				-1.7
2,682,064	+				+2.1
2,682,292	+		ABI39_RS10045	0.12	-0.3
2,682,292	+		ABI39_RS10045	0.12	-1.1
2,682,335	-		ABI39_RS10045	0.16	-0.5
2,682,676	-		ABI39_RS10045	0.45	+0.5
2,682,714	+		ABI39_RS10045	0.49	-0.6
2,682,715	-		ABI39_RS10045	0.49	-0.1
2,682,715	-		ABI39_RS10045	0.49	-0.5
2,682,715	-		ABI39_RS10045	0.49	-1.6
2,682,720	+		ABI39_RS10045	0.49	+2.4
2,682,721	-		ABI39_RS10045	0.49	+0.8
2,682,786	+		ABI39_RS10045	0.55	-0.6
2,682,998	-		ABI39_RS10045	0.73	+1.0
2,683,090	+		ABI39_RS10045	0.81	-1.8
2,683,107	-		ABI39_RS10045	0.82	-0.7