Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS08530

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
2,272,103	+		ABI39_RS08525	0.21	+1.1
2,272,108	-		ABI39_RS08525	0.22	+1.4
2,272,184	-		ABI39_RS08525	0.29	+0.3
2,272,184	-		ABI39_RS08525	0.29	+0.2
2,272,300	+		ABI39_RS08525	0.39	+1.1
2,272,326	+		ABI39_RS08525	0.42	-0.2
2,272,329	-		ABI39_RS08525	0.42	+1.3
2,272,563	-		ABI39_RS08525	0.64	+0.9
2,272,646	-		ABI39_RS08525	0.71	+1.1
2,272,660	+		ABI39_RS08525	0.73	+0.3
2,272,734	+		ABI39_RS08525	0.80	+0.3
2,272,796	+		ABI39_RS08525	0.85	+0.4
2,272,796	+		ABI39_RS08525	0.85	+0.0
2,272,826	+		ABI39_RS08525	0.88	-0.3
2,272,847	+				-0.4
2,272,848	-				-0.7
2,272,848	-				+0.1
2,272,848	-				+2.3
2,272,864	-				+1.1
2,272,866	-				-0.4
2,272,866	-				+1.4
2,272,953	-				-0.1
2,273,008	-				+0.9
2,273,034	+				+1.5
2,273,053	+				-0.1
2,273,053	+				-0.4
2,273,075	-				-0.8
2,273,097	+				-0.7
2,273,102	-				+0.5
2,273,156	+				-0.9
2,273,281	+		ABI39_RS08530	0.13	+4.5
2,273,302	-		ABI39_RS08530	0.14	-0.9
2,273,342	+		ABI39_RS08530	0.17	-0.5
2,273,373	-		ABI39_RS08530	0.19	-0.4
2,273,382	+		ABI39_RS08530	0.20	+2.2
2,273,404	+		ABI39_RS08530	0.21	+0.5
2,273,405	-		ABI39_RS08530	0.21	+0.2
2,273,519	+		ABI39_RS08530	0.28	+0.2
2,273,543	+		ABI39_RS08530	0.30	+0.2
2,273,610	+		ABI39_RS08530	0.34	-0.3
2,273,610	+		ABI39_RS08530	0.34	-0.8
2,273,716	+		ABI39_RS08530	0.41	+2.2
2,273,788	+		ABI39_RS08530	0.46	+2.0
2,273,910	+		ABI39_RS08530	0.53	-0.4
2,273,936	+		ABI39_RS08530	0.55	-0.5
2,273,937	-		ABI39_RS08530	0.55	-0.5
2,274,049	+		ABI39_RS08530	0.62	+2.3
2,274,142	-		ABI39_RS08530	0.68	-0.4
2,274,216	+		ABI39_RS08530	0.73	+0.4
2,274,218	+		ABI39_RS08530	0.73	-0.2
2,274,220	+		ABI39_RS08530	0.73	+0.0
2,274,221	-		ABI39_RS08530	0.73	-0.1
2,274,349	-		ABI39_RS08530	0.82	+4.8
2,274,365	-		ABI39_RS08530	0.83	+2.2
2,274,368	-		ABI39_RS08530	0.83	-0.0
2,274,417	+		ABI39_RS08530	0.86	+4.5
2,274,508	-				+1.9
2,274,563	+				-0.0
2,274,702	-		ABI39_RS08535	0.12	-2.5
2,274,730	-		ABI39_RS08535	0.16	-0.0
2,274,731	+		ABI39_RS08535	0.17	-0.4
2,274,766	+		ABI39_RS08535	0.22	+2.2
2,274,767	-		ABI39_RS08535	0.23	-0.6
2,274,807	-		ABI39_RS08535	0.29	+3.7
2,274,867	+		ABI39_RS08535	0.39	-0.4
2,274,871	+		ABI39_RS08535	0.40	-2.2
2,274,949	+		ABI39_RS08535	0.53	-1.0
2,274,950	-		ABI39_RS08535	0.53	-0.5
2,274,950	-		ABI39_RS08535	0.53	-1.1
2,275,221	-				-0.1
2,275,297	+		ABI39_RS08540	0.22	+1.3
2,275,308	-		ABI39_RS08540	0.25	+2.1
2,275,390	+		ABI39_RS08540	0.49	-0.5
2,275,391	-		ABI39_RS08540	0.49	-0.4
2,275,397	+		ABI39_RS08540	0.51	-0.7
2,275,451	+		ABI39_RS08540	0.66	-0.8
2,275,522	+		ABI39_RS08540	0.86	-0.9
2,275,552	+				+1.0
2,275,552	+				-2.6
2,275,553	-				+0.8
2,275,565	+				+0.4