Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04870

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
1,356,081	-		ABI39_RS04860	0.77	-0.4
1,356,539	-		ABI39_RS04865	0.67	+0.4
1,356,543	-		ABI39_RS04865	0.68	-1.3
1,356,743	+				-0.4
1,356,753	+				+0.8
1,356,754	-				-0.1
1,356,775	+				+2.0
1,356,776	-				-0.5
1,356,787	-				-1.2
1,356,789	-				+0.3
1,356,808	+				-0.5
1,356,978	-				-0.3
1,357,000	-				-1.2
1,357,003	+				+0.8
1,357,004	-				-0.3
1,357,004	-				-0.6
1,357,034	-				-0.5
1,357,102	-				+4.5
1,357,166	-		ABI39_RS04870	0.10	+0.9
1,357,185	+		ABI39_RS04870	0.12	+2.8
1,357,185	+		ABI39_RS04870	0.12	+1.5
1,357,185	+		ABI39_RS04870	0.12	+1.4
1,357,326	+		ABI39_RS04870	0.24	+5.0
1,357,368	-		ABI39_RS04870	0.28	+1.8
1,357,368	-		ABI39_RS04870	0.28	+2.2
1,357,448	+		ABI39_RS04870	0.35	+2.0
1,357,453	-		ABI39_RS04870	0.35	-1.5
1,357,726	-		ABI39_RS04870	0.59	-2.6
1,357,749	+		ABI39_RS04870	0.61	+1.2
1,357,750	-		ABI39_RS04870	0.61	+0.3
1,357,847	+		ABI39_RS04870	0.70	-1.5
1,357,916	+		ABI39_RS04870	0.76	+0.2
1,357,973	+		ABI39_RS04870	0.81	+0.6
1,357,974	-		ABI39_RS04870	0.81	+0.8
1,357,974	-		ABI39_RS04870	0.81	+0.3
1,357,981	+		ABI39_RS04870	0.82	-0.8
1,357,982	-		ABI39_RS04870	0.82	+0.2
1,357,983	+		ABI39_RS04870	0.82	+1.7
1,358,120	-				+1.7
1,358,151	+				-0.2
1,358,160	+				+1.8
1,358,163	-				+0.5
1,358,206	-				-0.0
1,358,206	-				+3.0
1,358,237	+				+0.2
1,358,266	+				+2.4
1,358,273	+				+4.6
1,358,275	+				-0.6
1,358,277	+				+3.9
1,358,278	-				-0.2
1,358,282	+				+2.3
1,358,284	+				+1.0
1,358,285	-				+1.1
1,358,314	+				+2.6
1,358,318	+				+1.2
1,358,319	-				+0.3
1,358,319	-				-1.6
1,358,383	+				+1.9
1,358,404	-				+0.2
1,358,425	+				+0.3
1,358,425	+				-0.2
1,358,430	-				+2.2
1,358,430	-				+1.7
1,358,655	+		ABI39_RS04875	0.40	-0.4
1,358,656	-		ABI39_RS04875	0.40	-0.3
1,358,674	+		ABI39_RS04875	0.43	-1.7
1,358,675	-		ABI39_RS04875	0.44	+2.2
1,358,746	-		ABI39_RS04875	0.57	-1.0
1,358,781	+		ABI39_RS04875	0.64	+0.3
1,358,850	+		ABI39_RS04875	0.77	-0.1
1,358,958	+				-2.8
1,358,958	+				+0.8
1,358,981	+				-0.4
1,358,981	+				-0.7
1,358,982	-				+2.5
1,359,024	-		ABI39_RS21700	0.22	-0.7
1,359,087	+		ABI39_RS21700	0.48	-0.1
1,359,128	-		ABI39_RS21700	0.65	-0.4
1,359,145	-		ABI39_RS21700	0.73	-0.7
1,359,146	+		ABI39_RS21700	0.73	-0.4