Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04080

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
1,154,416	+		ABI39_RS04075	0.62	+3.2
1,154,437	-		ABI39_RS04075	0.63	-0.9
1,154,455	+		ABI39_RS04075	0.64	+1.8
1,154,653	+		ABI39_RS04075	0.72	-0.4
1,154,719	+		ABI39_RS04075	0.75	+0.1
1,154,736	+		ABI39_RS04075	0.75	+2.1
1,154,736	+		ABI39_RS04075	0.75	+2.7
1,154,736	+		ABI39_RS04075	0.75	+0.1
1,154,737	-		ABI39_RS04075	0.76	+1.3
1,154,770	+		ABI39_RS04075	0.77	-0.6
1,154,988	+		ABI39_RS04075	0.86	-1.0
1,155,011	-		ABI39_RS04075	0.87	+2.7
1,155,011	-		ABI39_RS04075	0.87	+0.7
1,155,022	-		ABI39_RS04075	0.87	+1.5
1,155,025	+		ABI39_RS04075	0.88	+1.1
1,155,113	+				+1.4
1,155,166	-				+1.5
1,155,222	-				-0.7
1,155,293	+				+0.5
1,155,294	-				+1.7
1,155,444	-				+2.5
1,155,817	+		ABI39_RS04080	0.30	+2.7
1,155,844	+		ABI39_RS04080	0.32	-0.7
1,155,880	+		ABI39_RS04080	0.34	-1.2
1,155,881	-		ABI39_RS04080	0.34	-1.1
1,155,886	-		ABI39_RS04080	0.35	+1.0
1,155,908	+		ABI39_RS04080	0.36	-0.1
1,155,936	-		ABI39_RS04080	0.38	-0.1
1,155,952	-		ABI39_RS04080	0.39	-0.9
1,156,013	+		ABI39_RS04080	0.43	-2.2
1,156,014	-		ABI39_RS04080	0.43	-0.0
1,156,043	+		ABI39_RS04080	0.45	+4.0
1,156,043	+		ABI39_RS04080	0.45	-0.3
1,156,050	-		ABI39_RS04080	0.45	+0.2
1,156,081	-		ABI39_RS04080	0.47	-0.3
1,156,120	+		ABI39_RS04080	0.50	+1.5
1,156,262	-		ABI39_RS04080	0.59	+2.6
1,156,366	-		ABI39_RS04080	0.66	+7.5
1,156,408	-		ABI39_RS04080	0.69	-0.5
1,156,563	+		ABI39_RS04080	0.79	+0.4
1,156,566	-		ABI39_RS04080	0.79	+1.3
1,156,728	+		ABI39_RS04080	0.89	+0.3
1,156,760	-				+1.9
1,156,879	+				-0.6
1,156,907	+				+1.4
1,156,913	+				-0.1
1,156,914	-				-0.2
1,156,970	-				+1.8
1,156,972	-				+0.6
1,156,972	-				-0.1
1,157,038	+				+0.8
1,157,039	-				+0.9
1,157,039	-				+2.0
1,157,092	-				-0.6
1,157,217	+		ABI39_RS04085	0.15	+0.0
1,157,281	-		ABI39_RS04085	0.18	+5.7
1,157,334	-		ABI39_RS04085	0.21	+0.1
1,157,392	+		ABI39_RS04085	0.23	+1.8
1,157,404	+		ABI39_RS04085	0.24	-1.3
1,157,404	+		ABI39_RS04085	0.24	+0.9
1,157,445	-		ABI39_RS04085	0.26	+2.6
1,157,448	+		ABI39_RS04085	0.26	-0.1
1,157,489	-		ABI39_RS04085	0.28	+3.2
1,157,528	+		ABI39_RS04085	0.30	-0.0
1,157,530	+		ABI39_RS04085	0.30	+2.8
1,157,530	+		ABI39_RS04085	0.30	-0.1
1,157,717	+		ABI39_RS04085	0.39	-1.2
1,157,717	+		ABI39_RS04085	0.39	-1.1
1,157,850	+		ABI39_RS04085	0.46	+0.2
1,157,854	-		ABI39_RS04085	0.46	-1.1