Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03005 and ABI39_RS03010 are separated by 358 nucleotides ABI39_RS03010 and ABI39_RS03015 are separated by 100 nucleotides ABI39_RS03015 and ABI39_RS03020 are separated by 167 nucleotides
ABI39_RS03005: ABI39_RS03005 - rhamnulose-1-phosphate aldolase, at 873,938 to 874,747
_RS03005
ABI39_RS03010: ABI39_RS03010 - DUF4251 domain-containing protein, at 875,106 to 875,603
_RS03010
ABI39_RS03015: ABI39_RS03015 - right-handed parallel beta-helix repeat-containing protein, at 875,704 to 877,218
_RS03015
ABI39_RS03020: ABI39_RS03020 - RagB/SusD family nutrient uptake outer membrane protein, at 877,386 to 879,005
_RS03020
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 874.755 kb on - strand at 874.909 kb on + strand at 875.030 kb on - strand at 875.090 kb on - strand at 875.103 kb on + strand at 875.106 kb on - strand at 875.106 kb on - strand at 875.318 kb on - strand, within ABI39_RS03010 at 875.364 kb on + strand, within ABI39_RS03010 at 875.534 kb on - strand, within ABI39_RS03010 at 875.649 kb on + strand at 875.706 kb on - strand at 875.765 kb on - strand at 875.871 kb on + strand, within ABI39_RS03015 at 875.909 kb on + strand, within ABI39_RS03015 at 875.910 kb on - strand, within ABI39_RS03015 at 875.928 kb on + strand, within ABI39_RS03015 at 875.929 kb on - strand, within ABI39_RS03015 at 875.997 kb on + strand, within ABI39_RS03015 at 875.997 kb on + strand, within ABI39_RS03015 at 876.037 kb on - strand, within ABI39_RS03015 at 876.178 kb on + strand, within ABI39_RS03015 at 876.179 kb on - strand, within ABI39_RS03015 at 876.218 kb on - strand, within ABI39_RS03015 at 876.259 kb on + strand, within ABI39_RS03015 at 876.263 kb on - strand, within ABI39_RS03015 at 876.272 kb on + strand, within ABI39_RS03015 at 876.273 kb on - strand, within ABI39_RS03015 at 876.287 kb on + strand, within ABI39_RS03015 at 876.293 kb on + strand, within ABI39_RS03015 at 876.464 kb on - strand, within ABI39_RS03015 at 876.470 kb on + strand, within ABI39_RS03015 at 876.483 kb on + strand, within ABI39_RS03015 at 876.503 kb on - strand, within ABI39_RS03015 at 876.615 kb on + strand, within ABI39_RS03015 at 876.627 kb on + strand, within ABI39_RS03015 at 876.721 kb on + strand, within ABI39_RS03015 at 876.799 kb on + strand, within ABI39_RS03015 at 876.869 kb on - strand, within ABI39_RS03015 at 876.882 kb on + strand, within ABI39_RS03015 at 876.899 kb on + strand, within ABI39_RS03015 at 876.909 kb on + strand, within ABI39_RS03015 at 876.959 kb on - strand, within ABI39_RS03015 at 876.959 kb on - strand, within ABI39_RS03015 at 876.963 kb on - strand, within ABI39_RS03015 at 876.981 kb on + strand, within ABI39_RS03015 at 877.113 kb on + strand at 877.116 kb on + strand at 877.119 kb on + strand at 877.145 kb on + strand at 877.149 kb on - strand at 877.149 kb on - strand at 877.245 kb on + strand at 877.424 kb on + strand at 877.501 kb on + strand at 877.523 kb on + strand at 877.527 kb on - strand at 877.719 kb on + strand, within ABI39_RS03020 at 877.727 kb on + strand, within ABI39_RS03020 at 877.798 kb on + strand, within ABI39_RS03020 at 877.798 kb on + strand, within ABI39_RS03020 at 877.853 kb on + strand, within ABI39_RS03020 at 877.855 kb on + strand, within ABI39_RS03020 at 877.861 kb on + strand, within ABI39_RS03020 at 877.863 kb on + strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.895 kb on - strand, within ABI39_RS03020 at 877.897 kb on - strand, within ABI39_RS03020 at 877.926 kb on - strand, within ABI39_RS03020 at 877.930 kb on - strand, within ABI39_RS03020 at 878.115 kb on + strand, within ABI39_RS03020
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 874,755 - +0.8 874,909 + -0.5 875,030 - -0.3 875,090 - -0.0 875,103 + +0.4 875,106 - -0.8 875,106 - -0.5 875,318 - ABI39_RS03010 0.43 -0.2 875,364 + ABI39_RS03010 0.52 -0.3 875,534 - ABI39_RS03010 0.86 -1.0 875,649 + +3.3 875,706 - -1.1 875,765 - +1.8 875,871 + ABI39_RS03015 0.11 +1.2 875,909 + ABI39_RS03015 0.14 +1.7 875,910 - ABI39_RS03015 0.14 -1.1 875,928 + ABI39_RS03015 0.15 +1.7 875,929 - ABI39_RS03015 0.15 +0.9 875,997 + ABI39_RS03015 0.19 -0.6 875,997 + ABI39_RS03015 0.19 +3.8 876,037 - ABI39_RS03015 0.22 -0.2 876,178 + ABI39_RS03015 0.31 +3.2 876,179 - ABI39_RS03015 0.31 -1.0 876,218 - ABI39_RS03015 0.34 -0.2 876,259 + ABI39_RS03015 0.37 +0.5 876,263 - ABI39_RS03015 0.37 +0.9 876,272 + ABI39_RS03015 0.37 +1.2 876,273 - ABI39_RS03015 0.38 +1.4 876,287 + ABI39_RS03015 0.38 -0.7 876,293 + ABI39_RS03015 0.39 +2.5 876,464 - ABI39_RS03015 0.50 -0.0 876,470 + ABI39_RS03015 0.51 -0.7 876,483 + ABI39_RS03015 0.51 +1.5 876,503 - ABI39_RS03015 0.53 -0.8 876,615 + ABI39_RS03015 0.60 +0.9 876,627 + ABI39_RS03015 0.61 +2.3 876,721 + ABI39_RS03015 0.67 -0.0 876,799 + ABI39_RS03015 0.72 -0.9 876,869 - ABI39_RS03015 0.77 -0.2 876,882 + ABI39_RS03015 0.78 -0.5 876,899 + ABI39_RS03015 0.79 -0.3 876,909 + ABI39_RS03015 0.80 -0.2 876,959 - ABI39_RS03015 0.83 +1.6 876,959 - ABI39_RS03015 0.83 -0.4 876,963 - ABI39_RS03015 0.83 -0.8 876,981 + ABI39_RS03015 0.84 -0.3 877,113 + +0.1 877,116 + +0.7 877,119 + -0.5 877,145 + +0.0 877,149 - +2.1 877,149 - -1.5 877,245 + -0.4 877,424 + +2.5 877,501 + -0.7 877,523 + +0.6 877,527 - -0.1 877,719 + ABI39_RS03020 0.21 -0.1 877,727 + ABI39_RS03020 0.21 +0.1 877,798 + ABI39_RS03020 0.25 +2.0 877,798 + ABI39_RS03020 0.25 -1.0 877,853 + ABI39_RS03020 0.29 +0.6 877,855 + ABI39_RS03020 0.29 -0.0 877,861 + ABI39_RS03020 0.29 -0.1 877,863 + ABI39_RS03020 0.29 -0.1 877,864 - ABI39_RS03020 0.30 +1.8 877,864 - ABI39_RS03020 0.30 +1.5 877,864 - ABI39_RS03020 0.30 +0.3 877,895 - ABI39_RS03020 0.31 +2.0 877,897 - ABI39_RS03020 0.32 -0.4 877,926 - ABI39_RS03020 0.33 +0.0 877,930 - ABI39_RS03020 0.34 +0.5 878,115 + ABI39_RS03020 0.45 -1.0
Or see this region's nucleotide sequence