Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS01345

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS01340 and ABI39_RS01345 overlap by 4 nucleotidesABI39_RS01345 and ABI39_RS01350 are separated by 27 nucleotides ABI39_RS01340: ABI39_RS01340 - DUF3440 domain-containing protein, at 413,785 to 415,086 _RS01340 ABI39_RS01345: ABI39_RS01345 - ParB-like nuclease domain-containing protein, at 415,083 to 415,595 _RS01345 ABI39_RS01350: ABI39_RS01350 - hypothetical protein, at 415,623 to 417,410 _RS01350 Position (kb) 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 414.175 kb on - strand, within ABI39_RS01340at 414.196 kb on + strand, within ABI39_RS01340at 414.197 kb on - strand, within ABI39_RS01340at 414.336 kb on + strand, within ABI39_RS01340at 414.356 kb on - strand, within ABI39_RS01340at 414.383 kb on + strand, within ABI39_RS01340at 414.411 kb on + strand, within ABI39_RS01340at 414.415 kb on + strand, within ABI39_RS01340at 414.415 kb on + strand, within ABI39_RS01340at 414.415 kb on + strand, within ABI39_RS01340at 414.438 kb on - strand, within ABI39_RS01340at 414.448 kb on + strand, within ABI39_RS01340at 414.494 kb on - strand, within ABI39_RS01340at 414.694 kb on + strand, within ABI39_RS01340at 414.711 kb on + strand, within ABI39_RS01340at 414.715 kb on + strand, within ABI39_RS01340at 414.825 kb on + strand, within ABI39_RS01340at 414.958 kb on + strandat 414.966 kb on + strandat 414.999 kb on - strandat 415.158 kb on - strand, within ABI39_RS01345at 415.223 kb on + strand, within ABI39_RS01345at 415.238 kb on - strand, within ABI39_RS01345at 415.248 kb on - strand, within ABI39_RS01345at 415.264 kb on + strand, within ABI39_RS01345at 415.264 kb on + strand, within ABI39_RS01345at 415.264 kb on + strand, within ABI39_RS01345at 415.264 kb on + strand, within ABI39_RS01345at 415.266 kb on + strand, within ABI39_RS01345at 415.267 kb on - strand, within ABI39_RS01345at 415.267 kb on - strand, within ABI39_RS01345at 415.442 kb on - strand, within ABI39_RS01345at 415.540 kb on + strand, within ABI39_RS01345at 415.593 kb on + strandat 415.731 kb on - strandat 415.843 kb on - strand, within ABI39_RS01350at 415.891 kb on + strand, within ABI39_RS01350at 415.892 kb on - strand, within ABI39_RS01350at 415.987 kb on + strand, within ABI39_RS01350at 416.111 kb on - strand, within ABI39_RS01350at 416.132 kb on + strand, within ABI39_RS01350at 416.155 kb on + strand, within ABI39_RS01350at 416.189 kb on + strand, within ABI39_RS01350at 416.226 kb on - strand, within ABI39_RS01350at 416.264 kb on + strand, within ABI39_RS01350at 416.265 kb on - strand, within ABI39_RS01350at 416.289 kb on - strand, within ABI39_RS01350at 416.333 kb on + strand, within ABI39_RS01350at 416.334 kb on - strand, within ABI39_RS01350at 416.408 kb on + strand, within ABI39_RS01350at 416.566 kb on - strand, within ABI39_RS01350at 416.568 kb on + strand, within ABI39_RS01350

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
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414,175 - ABI39_RS01340 0.30 -0.4
414,196 + ABI39_RS01340 0.32 -0.8
414,197 - ABI39_RS01340 0.32 -0.8
414,336 + ABI39_RS01340 0.42 +0.0
414,356 - ABI39_RS01340 0.44 -1.3
414,383 + ABI39_RS01340 0.46 -0.1
414,411 + ABI39_RS01340 0.48 -2.8
414,415 + ABI39_RS01340 0.48 -1.6
414,415 + ABI39_RS01340 0.48 -2.0
414,415 + ABI39_RS01340 0.48 -0.2
414,438 - ABI39_RS01340 0.50 -1.0
414,448 + ABI39_RS01340 0.51 -1.3
414,494 - ABI39_RS01340 0.54 +1.0
414,694 + ABI39_RS01340 0.70 -1.0
414,711 + ABI39_RS01340 0.71 -0.7
414,715 + ABI39_RS01340 0.71 -0.8
414,825 + ABI39_RS01340 0.80 -0.9
414,958 + -0.6
414,966 + -0.3
414,999 - +0.0
415,158 - ABI39_RS01345 0.15 -1.3
415,223 + ABI39_RS01345 0.27 -0.6
415,238 - ABI39_RS01345 0.30 -0.7
415,248 - ABI39_RS01345 0.32 -0.8
415,264 + ABI39_RS01345 0.35 -0.5
415,264 + ABI39_RS01345 0.35 -1.0
415,264 + ABI39_RS01345 0.35 -0.6
415,264 + ABI39_RS01345 0.35 -0.6
415,266 + ABI39_RS01345 0.36 -1.1
415,267 - ABI39_RS01345 0.36 -2.0
415,267 - ABI39_RS01345 0.36 -0.4
415,442 - ABI39_RS01345 0.70 -2.2
415,540 + ABI39_RS01345 0.89 -0.5
415,593 + +2.0
415,731 - -0.4
415,843 - ABI39_RS01350 0.12 +1.6
415,891 + ABI39_RS01350 0.15 -0.2
415,892 - ABI39_RS01350 0.15 +0.7
415,987 + ABI39_RS01350 0.20 -0.2
416,111 - ABI39_RS01350 0.27 -0.6
416,132 + ABI39_RS01350 0.28 +2.6
416,155 + ABI39_RS01350 0.30 -1.4
416,189 + ABI39_RS01350 0.32 +0.9
416,226 - ABI39_RS01350 0.34 +1.6
416,264 + ABI39_RS01350 0.36 +0.5
416,265 - ABI39_RS01350 0.36 -1.3
416,289 - ABI39_RS01350 0.37 +0.1
416,333 + ABI39_RS01350 0.40 +1.0
416,334 - ABI39_RS01350 0.40 +1.5
416,408 + ABI39_RS01350 0.44 -0.4
416,566 - ABI39_RS01350 0.53 -0.4
416,568 + ABI39_RS01350 0.53 -2.0

Or see this region's nucleotide sequence