Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00450 and ABI39_RS00455 are separated by 108 nucleotides ABI39_RS00455 and ABI39_RS00460 are separated by 18 nucleotides ABI39_RS00460 and ABI39_RS00465 overlap by 14 nucleotides
ABI39_RS00450: ABI39_RS00450 - family 20 glycosylhydrolase, at 128,378 to 130,684
_RS00450
ABI39_RS00455: ABI39_RS00455 - hypothetical protein, at 130,793 to 131,284
_RS00455
ABI39_RS00460: ABI39_RS00460 - hypothetical protein, at 131,303 to 131,524
_RS00460
ABI39_RS00465: ABI39_RS00465 - carbon starvation protein A, at 131,511 to 132,941
_RS00465
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 129.863 kb on - strand, within ABI39_RS00450 at 129.869 kb on + strand, within ABI39_RS00450 at 129.872 kb on - strand, within ABI39_RS00450 at 129.877 kb on + strand, within ABI39_RS00450 at 130.003 kb on + strand, within ABI39_RS00450 at 130.004 kb on - strand, within ABI39_RS00450 at 130.097 kb on + strand, within ABI39_RS00450 at 130.120 kb on + strand, within ABI39_RS00450 at 130.125 kb on + strand, within ABI39_RS00450 at 130.139 kb on + strand, within ABI39_RS00450 at 130.140 kb on - strand, within ABI39_RS00450 at 130.219 kb on - strand, within ABI39_RS00450 at 130.452 kb on - strand, within ABI39_RS00450 at 130.483 kb on + strand at 130.728 kb on + strand at 130.786 kb on - strand at 130.846 kb on + strand, within ABI39_RS00455 at 130.885 kb on + strand, within ABI39_RS00455 at 130.978 kb on - strand, within ABI39_RS00455 at 130.988 kb on + strand, within ABI39_RS00455 at 131.067 kb on - strand, within ABI39_RS00455 at 131.284 kb on + strand at 131.285 kb on - strand at 131.391 kb on + strand, within ABI39_RS00460 at 131.392 kb on - strand, within ABI39_RS00460 at 131.403 kb on - strand, within ABI39_RS00460 at 131.430 kb on - strand, within ABI39_RS00460 at 131.449 kb on + strand, within ABI39_RS00460 at 131.473 kb on + strand, within ABI39_RS00460 at 131.473 kb on + strand, within ABI39_RS00460 at 131.484 kb on - strand, within ABI39_RS00460 at 131.530 kb on - strand at 131.566 kb on - strand at 131.600 kb on + strand at 131.603 kb on - strand at 131.612 kb on - strand at 131.648 kb on + strand at 131.651 kb on - strand at 131.654 kb on + strand, within ABI39_RS00465 at 131.662 kb on - strand, within ABI39_RS00465 at 131.696 kb on + strand, within ABI39_RS00465 at 131.747 kb on + strand, within ABI39_RS00465 at 131.768 kb on + strand, within ABI39_RS00465 at 131.768 kb on + strand, within ABI39_RS00465 at 131.795 kb on + strand, within ABI39_RS00465 at 131.833 kb on - strand, within ABI39_RS00465 at 131.834 kb on + strand, within ABI39_RS00465 at 131.861 kb on + strand, within ABI39_RS00465 at 131.872 kb on - strand, within ABI39_RS00465 at 131.982 kb on + strand, within ABI39_RS00465 at 132.050 kb on + strand, within ABI39_RS00465 at 132.279 kb on - strand, within ABI39_RS00465 at 132.281 kb on + strand, within ABI39_RS00465 at 132.282 kb on - strand, within ABI39_RS00465
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 129,863 - ABI39_RS00450 0.64 -0.7 129,869 + ABI39_RS00450 0.65 +0.0 129,872 - ABI39_RS00450 0.65 -1.0 129,877 + ABI39_RS00450 0.65 -0.5 130,003 + ABI39_RS00450 0.70 +0.4 130,004 - ABI39_RS00450 0.70 -1.9 130,097 + ABI39_RS00450 0.75 +1.6 130,120 + ABI39_RS00450 0.76 +4.1 130,125 + ABI39_RS00450 0.76 -2.0 130,139 + ABI39_RS00450 0.76 +0.7 130,140 - ABI39_RS00450 0.76 +2.7 130,219 - ABI39_RS00450 0.80 +0.6 130,452 - ABI39_RS00450 0.90 +0.5 130,483 + -0.5 130,728 + -0.3 130,786 - +0.0 130,846 + ABI39_RS00455 0.11 -0.1 130,885 + ABI39_RS00455 0.19 -0.2 130,978 - ABI39_RS00455 0.38 -0.6 130,988 + ABI39_RS00455 0.40 -0.6 131,067 - ABI39_RS00455 0.56 +0.1 131,284 + -0.0 131,285 - +1.3 131,391 + ABI39_RS00460 0.40 -0.3 131,392 - ABI39_RS00460 0.40 -0.8 131,403 - ABI39_RS00460 0.45 -0.8 131,430 - ABI39_RS00460 0.57 +0.3 131,449 + ABI39_RS00460 0.66 -0.3 131,473 + ABI39_RS00460 0.77 +1.7 131,473 + ABI39_RS00460 0.77 -1.4 131,484 - ABI39_RS00460 0.82 -1.1 131,530 - -1.5 131,566 - -0.4 131,600 + -0.9 131,603 - -1.3 131,612 - -0.3 131,648 + +1.2 131,651 - -1.0 131,654 + ABI39_RS00465 0.10 +0.7 131,662 - ABI39_RS00465 0.11 -0.4 131,696 + ABI39_RS00465 0.13 -1.4 131,747 + ABI39_RS00465 0.16 +0.2 131,768 + ABI39_RS00465 0.18 +2.2 131,768 + ABI39_RS00465 0.18 -1.6 131,795 + ABI39_RS00465 0.20 +0.5 131,833 - ABI39_RS00465 0.23 +0.7 131,834 + ABI39_RS00465 0.23 -1.1 131,861 + ABI39_RS00465 0.24 -0.1 131,872 - ABI39_RS00465 0.25 -1.2 131,982 + ABI39_RS00465 0.33 +0.7 132,050 + ABI39_RS00465 0.38 -0.4 132,279 - ABI39_RS00465 0.54 +1.6 132,281 + ABI39_RS00465 0.54 +2.7 132,282 - ABI39_RS00465 0.54 -0.2
Or see this region's nucleotide sequence