Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00040 and ABI39_RS00045 are separated by 105 nucleotides ABI39_RS00045 and ABI39_RS00050 are separated by 160 nucleotides ABI39_RS00050 and ABI39_RS23145 are separated by 155 nucleotides
ABI39_RS00040: ABI39_RS00040 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 10,881 to 12,197
_RS00040
ABI39_RS00045: ABI39_RS00045 - long-chain fatty acid--CoA ligase, at 12,303 to 13,976
_RS00045
ABI39_RS00050: ABI39_RS00050 - hypothetical protein, at 14,137 to 14,337
_RS00050
ABI39_RS23145: ABI39_RS23145 - hypothetical protein, at 14,493 to 15,183
_RS23145
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 11.905 kb on - strand, within ABI39_RS00040 at 12.085 kb on - strand at 12.227 kb on - strand at 12.266 kb on + strand at 12.379 kb on - strand at 12.403 kb on - strand at 12.428 kb on + strand at 12.440 kb on - strand at 12.483 kb on - strand, within ABI39_RS00045 at 12.546 kb on - strand, within ABI39_RS00045 at 12.668 kb on - strand, within ABI39_RS00045 at 12.767 kb on + strand, within ABI39_RS00045 at 12.796 kb on - strand, within ABI39_RS00045 at 12.814 kb on - strand, within ABI39_RS00045 at 12.965 kb on - strand, within ABI39_RS00045 at 13.048 kb on + strand, within ABI39_RS00045 at 13.099 kb on + strand, within ABI39_RS00045 at 13.118 kb on + strand, within ABI39_RS00045 at 13.119 kb on - strand, within ABI39_RS00045 at 13.136 kb on - strand, within ABI39_RS00045 at 13.205 kb on - strand, within ABI39_RS00045 at 13.213 kb on + strand, within ABI39_RS00045 at 13.227 kb on + strand, within ABI39_RS00045 at 13.337 kb on - strand, within ABI39_RS00045 at 13.478 kb on + strand, within ABI39_RS00045 at 13.501 kb on + strand, within ABI39_RS00045 at 13.530 kb on + strand, within ABI39_RS00045 at 13.531 kb on - strand, within ABI39_RS00045 at 13.603 kb on + strand, within ABI39_RS00045 at 13.603 kb on + strand, within ABI39_RS00045 at 13.604 kb on - strand, within ABI39_RS00045 at 13.623 kb on + strand, within ABI39_RS00045 at 13.627 kb on + strand, within ABI39_RS00045 at 13.628 kb on - strand, within ABI39_RS00045 at 13.739 kb on - strand, within ABI39_RS00045 at 13.768 kb on + strand, within ABI39_RS00045 at 13.771 kb on - strand, within ABI39_RS00045 at 13.832 kb on - strand at 13.953 kb on + strand at 13.954 kb on - strand at 13.954 kb on - strand at 14.018 kb on - strand at 14.108 kb on + strand at 14.112 kb on - strand at 14.244 kb on - strand, within ABI39_RS00050 at 14.244 kb on - strand, within ABI39_RS00050 at 14.335 kb on + strand at 14.407 kb on + strand at 14.454 kb on - strand at 14.544 kb on + strand at 14.557 kb on + strand at 14.558 kb on - strand at 14.561 kb on + strand at 14.578 kb on + strand, within ABI39_RS23145 at 14.578 kb on + strand, within ABI39_RS23145 at 14.583 kb on - strand, within ABI39_RS23145 at 14.635 kb on - strand, within ABI39_RS23145 at 14.687 kb on - strand, within ABI39_RS23145 at 14.745 kb on - strand, within ABI39_RS23145 at 14.745 kb on - strand, within ABI39_RS23145 at 14.879 kb on - strand, within ABI39_RS23145 at 14.956 kb on + strand, within ABI39_RS23145
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 11,905 - ABI39_RS00040 0.78 +2.9 12,085 - +2.7 12,227 - -1.0 12,266 + +1.4 12,379 - +0.2 12,403 - +0.6 12,428 + +3.2 12,440 - -0.4 12,483 - ABI39_RS00045 0.11 +0.8 12,546 - ABI39_RS00045 0.15 -1.2 12,668 - ABI39_RS00045 0.22 +0.0 12,767 + ABI39_RS00045 0.28 +2.7 12,796 - ABI39_RS00045 0.29 +2.6 12,814 - ABI39_RS00045 0.31 +4.1 12,965 - ABI39_RS00045 0.40 +0.9 13,048 + ABI39_RS00045 0.45 +0.2 13,099 + ABI39_RS00045 0.48 +3.0 13,118 + ABI39_RS00045 0.49 -0.0 13,119 - ABI39_RS00045 0.49 -0.3 13,136 - ABI39_RS00045 0.50 -1.4 13,205 - ABI39_RS00045 0.54 +1.5 13,213 + ABI39_RS00045 0.54 +1.7 13,227 + ABI39_RS00045 0.55 +4.5 13,337 - ABI39_RS00045 0.62 +0.6 13,478 + ABI39_RS00045 0.70 +0.6 13,501 + ABI39_RS00045 0.72 -0.9 13,530 + ABI39_RS00045 0.73 +2.2 13,531 - ABI39_RS00045 0.73 +0.6 13,603 + ABI39_RS00045 0.78 -0.5 13,603 + ABI39_RS00045 0.78 +1.2 13,604 - ABI39_RS00045 0.78 -0.7 13,623 + ABI39_RS00045 0.79 -0.0 13,627 + ABI39_RS00045 0.79 -1.2 13,628 - ABI39_RS00045 0.79 +0.4 13,739 - ABI39_RS00045 0.86 +1.9 13,768 + ABI39_RS00045 0.88 +2.8 13,771 - ABI39_RS00045 0.88 +2.5 13,832 - +0.0 13,953 + +1.1 13,954 - +2.0 13,954 - +0.7 14,018 - -1.0 14,108 + -0.1 14,112 - +2.9 14,244 - ABI39_RS00050 0.53 -1.0 14,244 - ABI39_RS00050 0.53 -0.4 14,335 + +0.5 14,407 + +2.5 14,454 - +2.4 14,544 + +0.8 14,557 + +0.0 14,558 - -0.8 14,561 + -1.5 14,578 + ABI39_RS23145 0.12 -1.0 14,578 + ABI39_RS23145 0.12 -0.6 14,583 - ABI39_RS23145 0.13 +1.2 14,635 - ABI39_RS23145 0.21 +0.4 14,687 - ABI39_RS23145 0.28 +1.9 14,745 - ABI39_RS23145 0.36 -0.3 14,745 - ABI39_RS23145 0.36 +0.1 14,879 - ABI39_RS23145 0.56 +0.5 14,956 + ABI39_RS23145 0.67 +1.0
Or see this region's nucleotide sequence