Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17515

Experiment: Bas21

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntkatE and cedA are separated by 182 nucleotidescedA and ydjO are separated by 288 nucleotides NOLOHH_17510: katE - catalase HPII, at 3,437,086 to 3,439,347 katE NOLOHH_17515: cedA - cell division activator CedA, at 3,439,530 to 3,439,793 cedA NOLOHH_17520: ydjO - Uncharacterized protein YdjO, at 3,440,082 to 3,440,885 ydjO Position (kb) 3439 3440Strain fitness (log2 ratio) -1 0 1at 3439.443 kb on + strandat 3439.444 kb on - strandat 3439.677 kb on + strand, within cedAat 3439.802 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
remove
3,439,443 + +0.3
3,439,444 - -0.7
3,439,677 + cedA NOLOHH_17515 0.56 -1.3
3,439,802 + -1.7

Or see this region's nucleotide sequence