Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yibG and rhsA are separated by 11 nucleotides rhsA and yibA are separated by 47 nucleotides
NOLOHH_07710: yibG - Uncharacterized protein YibG, at 1,474,371 to 1,474,832
yibG
NOLOHH_07715: rhsA - type IV secretion protein Rhs, at 1,474,844 to 1,475,782
rhsA
NOLOHH_07720: yibA - Protein YibA, at 1,475,830 to 1,476,672
yibA
Position (kb)
1474
1475 Strain fitness (log2 ratio)
-2
-1
0
1 at 1473.506 kb on + strand at 1473.506 kb on + strand at 1473.544 kb on + strand at 1473.620 kb on - strand at 1473.835 kb on - strand at 1473.943 kb on - strand at 1474.032 kb on + strand at 1474.128 kb on - strand at 1474.128 kb on - strand at 1474.129 kb on + strand at 1474.151 kb on - strand at 1474.154 kb on + strand at 1474.163 kb on - strand at 1474.182 kb on - strand at 1474.272 kb on - strand at 1474.273 kb on + strand at 1474.315 kb on + strand at 1474.337 kb on - strand at 1474.339 kb on + strand at 1474.398 kb on - strand at 1474.713 kb on + strand, within yibG at 1474.815 kb on + strand at 1474.851 kb on - strand at 1474.852 kb on + strand at 1474.911 kb on + strand at 1475.007 kb on - strand, within rhsA at 1475.017 kb on + strand, within rhsA at 1475.068 kb on + strand, within rhsA at 1475.122 kb on + strand, within rhsA at 1475.157 kb on + strand, within rhsA at 1475.158 kb on - strand, within rhsA at 1475.187 kb on - strand, within rhsA at 1475.207 kb on - strand, within rhsA at 1475.228 kb on - strand, within rhsA at 1475.228 kb on - strand, within rhsA at 1475.240 kb on - strand, within rhsA at 1475.272 kb on + strand, within rhsA at 1475.275 kb on + strand, within rhsA at 1475.275 kb on + strand, within rhsA at 1475.319 kb on - strand, within rhsA at 1475.319 kb on - strand, within rhsA at 1475.348 kb on + strand, within rhsA at 1475.349 kb on - strand, within rhsA at 1475.354 kb on + strand, within rhsA at 1475.355 kb on - strand, within rhsA at 1475.355 kb on - strand, within rhsA at 1475.380 kb on - strand, within rhsA at 1475.487 kb on + strand, within rhsA at 1475.487 kb on + strand, within rhsA at 1475.487 kb on + strand, within rhsA at 1475.566 kb on - strand, within rhsA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 1,473,506 + +1.3 1,473,506 + -0.5 1,473,544 + -0.6 1,473,620 - -1.2 1,473,835 - +1.5 1,473,943 - -0.6 1,474,032 + +0.2 1,474,128 - -0.0 1,474,128 - +0.2 1,474,129 + -0.7 1,474,151 - +0.0 1,474,154 + -0.1 1,474,163 - -0.8 1,474,182 - -0.1 1,474,272 - -2.6 1,474,273 + -0.2 1,474,315 + -0.5 1,474,337 - +0.2 1,474,339 + +0.3 1,474,398 - +0.3 1,474,713 + yibG NOLOHH_07710 0.74 -0.9 1,474,815 + -0.3 1,474,851 - -2.0 1,474,852 + -0.4 1,474,911 + +0.3 1,475,007 - rhsA NOLOHH_07715 0.17 +0.0 1,475,017 + rhsA NOLOHH_07715 0.18 -1.0 1,475,068 + rhsA NOLOHH_07715 0.24 +0.4 1,475,122 + rhsA NOLOHH_07715 0.30 +0.2 1,475,157 + rhsA NOLOHH_07715 0.33 +0.8 1,475,158 - rhsA NOLOHH_07715 0.33 +0.9 1,475,187 - rhsA NOLOHH_07715 0.37 -0.3 1,475,207 - rhsA NOLOHH_07715 0.39 -0.8 1,475,228 - rhsA NOLOHH_07715 0.41 +0.6 1,475,228 - rhsA NOLOHH_07715 0.41 +0.1 1,475,240 - rhsA NOLOHH_07715 0.42 -0.4 1,475,272 + rhsA NOLOHH_07715 0.46 +0.3 1,475,275 + rhsA NOLOHH_07715 0.46 +0.5 1,475,275 + rhsA NOLOHH_07715 0.46 -0.5 1,475,319 - rhsA NOLOHH_07715 0.51 -0.0 1,475,319 - rhsA NOLOHH_07715 0.51 -1.6 1,475,348 + rhsA NOLOHH_07715 0.54 -0.0 1,475,349 - rhsA NOLOHH_07715 0.54 +0.8 1,475,354 + rhsA NOLOHH_07715 0.54 +0.0 1,475,355 - rhsA NOLOHH_07715 0.54 -0.2 1,475,355 - rhsA NOLOHH_07715 0.54 +0.5 1,475,380 - rhsA NOLOHH_07715 0.57 -1.7 1,475,487 + rhsA NOLOHH_07715 0.68 -0.9 1,475,487 + rhsA NOLOHH_07715 0.68 +0.1 1,475,487 + rhsA NOLOHH_07715 0.68 -0.1 1,475,566 - rhsA NOLOHH_07715 0.77 +0.6
Or see this region's nucleotide sequence