Strain Fitness in Escherichia coli ECOR27 around NOLOHH_07710

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyibG and rhsA are separated by 11 nucleotidesrhsA and yibA are separated by 47 nucleotides NOLOHH_07710: yibG - Uncharacterized protein YibG, at 1,474,371 to 1,474,832 yibG NOLOHH_07715: rhsA - type IV secretion protein Rhs, at 1,474,844 to 1,475,782 rhsA NOLOHH_07720: yibA - Protein YibA, at 1,475,830 to 1,476,672 yibA Position (kb) 1474 1475Strain fitness (log2 ratio) -2 -1 0 1at 1473.506 kb on + strandat 1473.506 kb on + strandat 1473.544 kb on + strandat 1473.620 kb on - strandat 1473.835 kb on - strandat 1473.943 kb on - strandat 1474.032 kb on + strandat 1474.128 kb on - strandat 1474.128 kb on - strandat 1474.129 kb on + strandat 1474.151 kb on - strandat 1474.154 kb on + strandat 1474.163 kb on - strandat 1474.182 kb on - strandat 1474.272 kb on - strandat 1474.273 kb on + strandat 1474.315 kb on + strandat 1474.337 kb on - strandat 1474.339 kb on + strandat 1474.398 kb on - strandat 1474.713 kb on + strand, within yibGat 1474.815 kb on + strandat 1474.851 kb on - strandat 1474.852 kb on + strandat 1474.911 kb on + strandat 1475.007 kb on - strand, within rhsAat 1475.017 kb on + strand, within rhsAat 1475.068 kb on + strand, within rhsAat 1475.122 kb on + strand, within rhsAat 1475.157 kb on + strand, within rhsAat 1475.158 kb on - strand, within rhsAat 1475.187 kb on - strand, within rhsAat 1475.207 kb on - strand, within rhsAat 1475.228 kb on - strand, within rhsAat 1475.228 kb on - strand, within rhsAat 1475.240 kb on - strand, within rhsAat 1475.272 kb on + strand, within rhsAat 1475.275 kb on + strand, within rhsAat 1475.275 kb on + strand, within rhsAat 1475.319 kb on - strand, within rhsAat 1475.319 kb on - strand, within rhsAat 1475.348 kb on + strand, within rhsAat 1475.349 kb on - strand, within rhsAat 1475.354 kb on + strand, within rhsAat 1475.355 kb on - strand, within rhsAat 1475.355 kb on - strand, within rhsAat 1475.380 kb on - strand, within rhsAat 1475.487 kb on + strand, within rhsAat 1475.487 kb on + strand, within rhsAat 1475.487 kb on + strand, within rhsAat 1475.566 kb on - strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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1,473,506 + +1.3
1,473,506 + -0.5
1,473,544 + -0.6
1,473,620 - -1.2
1,473,835 - +1.5
1,473,943 - -0.6
1,474,032 + +0.2
1,474,128 - -0.0
1,474,128 - +0.2
1,474,129 + -0.7
1,474,151 - +0.0
1,474,154 + -0.1
1,474,163 - -0.8
1,474,182 - -0.1
1,474,272 - -2.6
1,474,273 + -0.2
1,474,315 + -0.5
1,474,337 - +0.2
1,474,339 + +0.3
1,474,398 - +0.3
1,474,713 + yibG NOLOHH_07710 0.74 -0.9
1,474,815 + -0.3
1,474,851 - -2.0
1,474,852 + -0.4
1,474,911 + +0.3
1,475,007 - rhsA NOLOHH_07715 0.17 +0.0
1,475,017 + rhsA NOLOHH_07715 0.18 -1.0
1,475,068 + rhsA NOLOHH_07715 0.24 +0.4
1,475,122 + rhsA NOLOHH_07715 0.30 +0.2
1,475,157 + rhsA NOLOHH_07715 0.33 +0.8
1,475,158 - rhsA NOLOHH_07715 0.33 +0.9
1,475,187 - rhsA NOLOHH_07715 0.37 -0.3
1,475,207 - rhsA NOLOHH_07715 0.39 -0.8
1,475,228 - rhsA NOLOHH_07715 0.41 +0.6
1,475,228 - rhsA NOLOHH_07715 0.41 +0.1
1,475,240 - rhsA NOLOHH_07715 0.42 -0.4
1,475,272 + rhsA NOLOHH_07715 0.46 +0.3
1,475,275 + rhsA NOLOHH_07715 0.46 +0.5
1,475,275 + rhsA NOLOHH_07715 0.46 -0.5
1,475,319 - rhsA NOLOHH_07715 0.51 -0.0
1,475,319 - rhsA NOLOHH_07715 0.51 -1.6
1,475,348 + rhsA NOLOHH_07715 0.54 -0.0
1,475,349 - rhsA NOLOHH_07715 0.54 +0.8
1,475,354 + rhsA NOLOHH_07715 0.54 +0.0
1,475,355 - rhsA NOLOHH_07715 0.54 -0.2
1,475,355 - rhsA NOLOHH_07715 0.54 +0.5
1,475,380 - rhsA NOLOHH_07715 0.57 -1.7
1,475,487 + rhsA NOLOHH_07715 0.68 -0.9
1,475,487 + rhsA NOLOHH_07715 0.68 +0.1
1,475,487 + rhsA NOLOHH_07715 0.68 -0.1
1,475,566 - rhsA NOLOHH_07715 0.77 +0.6

Or see this region's nucleotide sequence