Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09600

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
2,585,044	-		ABI39_RS09595	0.27	+0.2
2,585,050	+		ABI39_RS09595	0.27	+1.1
2,585,100	-		ABI39_RS09595	0.32	-1.7
2,585,289	+		ABI39_RS09595	0.49	-0.2
2,585,289	+		ABI39_RS09595	0.49	-1.3
2,585,290	-		ABI39_RS09595	0.49	+0.4
2,585,349	+		ABI39_RS09595	0.55	-0.2
2,585,359	-		ABI39_RS09595	0.56	+2.5
2,585,359	-		ABI39_RS09595	0.56	-1.3
2,585,410	+		ABI39_RS09595	0.60	+1.5
2,585,411	-		ABI39_RS09595	0.60	-0.3
2,585,411	-		ABI39_RS09595	0.60	-0.4
2,585,478	-		ABI39_RS09595	0.66	+0.6
2,585,481	+		ABI39_RS09595	0.67	+2.0
2,585,482	-		ABI39_RS09595	0.67	-0.4
2,585,482	-		ABI39_RS09595	0.67	+1.8
2,585,482	-		ABI39_RS09595	0.67	-1.0
2,585,482	-		ABI39_RS09595	0.67	-0.4
2,585,482	-		ABI39_RS09595	0.67	-0.0
2,585,550	+		ABI39_RS09595	0.73	+1.8
2,585,583	+		ABI39_RS09595	0.76	+1.2
2,585,583	+		ABI39_RS09595	0.76	+0.5
2,585,601	+		ABI39_RS09595	0.78	+1.3
2,585,604	-		ABI39_RS09595	0.78	+2.2
2,585,800	+				-0.3
2,585,819	+				+0.2
2,585,820	-				-0.4
2,585,823	+				-1.7
2,585,823	+				-0.3
2,585,910	-				-0.5
2,585,931	-				+1.1
2,585,941	+				-0.2
2,586,061	+				-0.5
2,586,062	-				+0.1
2,586,095	-				+0.4
2,586,097	+				-1.1
2,586,168	+				+0.6
2,586,208	+		ABI39_RS09600	0.12	+0.7
2,586,210	+		ABI39_RS09600	0.12	+2.2
2,586,364	+		ABI39_RS09600	0.19	-0.1
2,586,414	+		ABI39_RS09600	0.21	+1.5
2,586,426	+		ABI39_RS09600	0.22	+1.2
2,586,426	+		ABI39_RS09600	0.22	+0.5
2,586,431	-		ABI39_RS09600	0.22	+1.9
2,586,538	-		ABI39_RS09600	0.27	-2.2
2,586,549	+		ABI39_RS09600	0.27	-0.8
2,586,590	-		ABI39_RS09600	0.29	+0.0
2,586,695	-		ABI39_RS09600	0.34	-0.0
2,586,728	+		ABI39_RS09600	0.36	-0.2
2,586,756	+		ABI39_RS09600	0.37	-0.1
2,586,757	-		ABI39_RS09600	0.37	+0.2
2,586,757	-		ABI39_RS09600	0.37	-1.9
2,586,810	-		ABI39_RS09600	0.39	-0.8
2,586,826	+		ABI39_RS09600	0.40	-0.3
2,586,947	-		ABI39_RS09600	0.46	-0.5
2,586,966	+		ABI39_RS09600	0.46	+0.1
2,586,967	-		ABI39_RS09600	0.47	-0.1
2,587,081	-		ABI39_RS09600	0.52	+1.3
2,587,089	+		ABI39_RS09600	0.52	-0.7
2,587,262	-		ABI39_RS09600	0.60	+1.0
2,587,262	-		ABI39_RS09600	0.60	-0.3
2,587,277	-		ABI39_RS09600	0.61	+0.4
2,587,282	-		ABI39_RS09600	0.61	-0.6
2,587,317	+		ABI39_RS09600	0.63	-1.1
2,587,431	-		ABI39_RS09600	0.68	+0.4
2,587,470	+		ABI39_RS09600	0.70	+0.9
2,587,486	+		ABI39_RS09600	0.70	+1.6
2,587,514	-		ABI39_RS09600	0.72	+0.3
2,587,576	+		ABI39_RS09600	0.74	-0.9
2,587,578	+		ABI39_RS09600	0.74	-1.4
2,587,578	+		ABI39_RS09600	0.74	-0.2
2,587,579	-		ABI39_RS09600	0.75	+0.2
2,587,579	-		ABI39_RS09600	0.75	+1.4
2,587,788	+		ABI39_RS09600	0.84	+0.0
2,587,841	-		ABI39_RS09600	0.87	+1.4
2,587,911	-		ABI39_RS09600	0.90	-0.4
2,587,935	-				-1.1
2,587,950	-				-0.4
2,587,951	+				-3.5
2,587,956	+				-0.7
2,588,052	-				-0.2
2,588,056	+				+0.4
2,588,176	+				+0.0
2,588,193	+				+0.6
2,588,405	+				-0.3
2,588,407	+				+0.9
2,588,409	+				-0.6
2,588,428	+				-0.9
2,588,429	-				+0.5
2,588,505	+				-0.9
2,588,519	+				+0.1
2,588,520	-				+0.3
2,588,542	+				+1.2
2,588,548	+				+0.9
2,588,707	-				-0.2
2,588,708	+				+3.3
2,588,715	-				-0.5
2,588,715	-				+2.8
2,588,728	-				+1.0