Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09155

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
2,464,795	+		ABI39_RS09145	0.90	-2.2
2,464,795	+		ABI39_RS09145	0.90	-0.2
2,464,882	+				-0.8
2,464,913	-				+2.0
2,464,913	-				+0.2
2,464,927	+				+3.1
2,464,943	-				-1.3
2,465,033	-				+1.0
2,465,035	+				-1.2
2,465,035	+				+1.4
2,465,080	+				+0.5
2,465,081	-				+0.3
2,465,081	-				+0.1
2,465,083	-				-0.4
2,465,161	+		ABI39_RS09150	0.14	-0.3
2,465,427	+		ABI39_RS09150	0.68	-0.7
2,465,569	+				-0.9
2,465,601	-				-1.3
2,465,635	-				+1.5
2,465,636	+				+2.5
2,465,637	-				-0.7
2,465,639	+				+0.9
2,465,639	+				-0.5
2,465,644	-				-0.5
2,465,733	+				+0.0
2,465,785	+				-0.3
2,465,888	+				-0.8
2,465,932	-				-0.3
2,466,157	-		ABI39_RS09155	0.24	-1.0
2,466,246	+		ABI39_RS09155	0.29	-0.4
2,466,265	-		ABI39_RS09155	0.31	+0.7
2,466,313	-		ABI39_RS09155	0.34	-2.2
2,466,423	+		ABI39_RS09155	0.40	-0.5
2,466,464	+		ABI39_RS09155	0.43	+1.8
2,466,554	+		ABI39_RS09155	0.48	+0.5
2,466,555	-		ABI39_RS09155	0.49	-0.7
2,466,566	+		ABI39_RS09155	0.49	+2.4
2,466,571	-		ABI39_RS09155	0.50	+2.5
2,466,624	+		ABI39_RS09155	0.53	-1.5
2,466,626	+		ABI39_RS09155	0.53	+0.7
2,466,626	+		ABI39_RS09155	0.53	+1.2
2,466,626	+		ABI39_RS09155	0.53	+4.2
2,466,626	+		ABI39_RS09155	0.53	-0.7
2,466,631	+		ABI39_RS09155	0.53	-0.7
2,466,735	-		ABI39_RS09155	0.60	+0.4
2,466,837	-		ABI39_RS09155	0.66	+0.3
2,466,887	+		ABI39_RS09155	0.69	-0.5
2,466,897	+		ABI39_RS09155	0.70	-0.5
2,466,898	-		ABI39_RS09155	0.70	-0.5
2,466,937	-		ABI39_RS09155	0.72	-0.7
2,466,939	+		ABI39_RS09155	0.72	+0.2
2,467,104	+		ABI39_RS09155	0.83	+0.5
2,467,107	+		ABI39_RS09155	0.83	+0.7
2,467,109	+		ABI39_RS09155	0.83	+0.6
2,467,118	-		ABI39_RS09155	0.83	+3.5
2,467,216	-		ABI39_RS09155	0.89	-0.5
2,467,224	+				-0.2
2,467,225	-				+1.0
2,467,226	+				-0.7
2,467,227	-				-0.9
2,467,227	-				-1.9
2,467,261	+				+2.5
2,467,262	-				-1.2
2,467,341	+				+2.0
2,467,344	-				+0.2
2,467,353	-				-0.7
2,467,364	-				+1.1
2,467,398	+				+1.4
2,467,401	-				-1.0
2,467,421	-				-0.0
2,467,512	-				-1.0
2,467,552	-		ABI39_RS09160	0.12	-0.8
2,467,557	-		ABI39_RS09160	0.13	+0.9
2,467,631	+		ABI39_RS09160	0.19	-1.3
2,467,701	-		ABI39_RS09160	0.25	+0.4
2,467,921	-		ABI39_RS09160	0.44	+0.4
2,467,921	-		ABI39_RS09160	0.44	-0.3
2,467,954	+		ABI39_RS09160	0.47	+2.0
2,467,997	+		ABI39_RS09160	0.51	-1.7
2,467,998	-		ABI39_RS09160	0.51	+1.2
2,467,998	-		ABI39_RS09160	0.51	+0.9
2,468,042	+		ABI39_RS09160	0.55	-0.4
2,468,144	-		ABI39_RS09160	0.63	+1.4
2,468,250	-		ABI39_RS09160	0.73	+0.7
2,468,264	+		ABI39_RS09160	0.74	+0.0
2,468,352	-		ABI39_RS09160	0.81	-0.2